Differences between revisions 1 and 4 (spanning 3 versions)

R2 and Cytoscape: Inferring gene targets by graph based integration and analysis of molecular biological data

Piet Molenaar

Academic Medical Center, University of Amsterdam, the Netherlands

Recipe

Cytoscape version: 2.4 - 2.6

Plugins to Load: BiNGO (Piet: provide link), NetMatch (http://baderlab.org/Software/NetMatch)

GUI steps:

Open website: http://hgserver1.amc.nl/cgi-bin/r2/main.cgi
Logon with: un pw -> if problem switch to ppt (Piet: todo provide restricted access logon)
Click Timeseries: a panel provides you with three choices;
Select TableBuilder:
Choose cellline imr
Choose Notch1
tbc

Data Files: Notch timeseries (Piet: refine this)

Presentation:

Webstart: Time permitting

Video: Time permitting

-  ← Revision 1 as of 2008-08-08 13:50:19 →
  Size: 10
  Editor: PietMolenaar
  Comment:
+  ← Revision 4 as of 2008-08-08 14:16:41 →
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  Comment:
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+= R2 and Cytoscape: Inferring gene targets by graph based integration and analysis of molecular biological data =

'''Piet Molenaar'''



''Academic Medical Center, University of Amsterdam, the Netherlands''





'''__Recipe__'''



''__Cytoscape version__'': 2.4 - 2.6 



''__Plugins to Load__'': BiNGO (Piet: provide link), NetMatch (http://baderlab.org/Software/NetMatch)



''__GUI steps__'': 

 1. Open website: http://hgserver1.amc.nl/cgi-bin/r2/main.cgi

 1. Logon with: un pw -> if problem switch to ppt (Piet: todo provide restricted access logon)

 1. Click Timeseries: a panel provides you with three choices; 

 1. Select TableBuilder: 

 1. Choose cellline imr

 1. Choose Notch1

 1. tbc





'''__Data Files__''': Notch timeseries (Piet: refine this)



'''__Presentation__''': 



'''__Webstart__''': Time permitting



'''__Video__''': Time permitting

Diff for "R2InferGeneTargetsRecipe"