Cytoscape Wiki
Quick Start Guide for Cytoscape 3 Developers
(Under construction!)
Introduction
This is a quick guide how to checkout and run Cytoscape 3 application with Maven.
Setup
You need the following tools on your machine.
- JDK 6
- Apache Maven
- Subversion client
Procedure
Checkout code from SVN
First, you need to check out Cytoscape 3 GUI distribution bundle:
svn co http://chianti.ucsd.edu/svn/core3/gui-distribution/trunk/ gui-distribution
Compile
cd gui-distribution mvn clean install
Run Application
cd distribution/target/cytoscape-${version}-null.dir/cytoscape-${version}
cytoscape.sh