Diff for "Molecular_Interaction_Maps/TranscriptionInhibitionShorthand"

Differences between revisions 4 and 5

Use Case Name : ../TranscriptionInhibitionShorthand

For Feature : MIMEditor

Summary

A user wants to describe the possibility that one species can inhibit transcription of a protein, without showing in detail, all of the mechanisms.

Step-by-Step User Action

User specifies a species as the inhibitor
User specifies a transcription reaction to inhibit
User specifies that there is a ../TranscriptionInhibitionShorthand relationship between the two
User optionally specifies the evidence for this reaction

Visual Aides

The symbol for ../TranscriptionInhibitionShorthand follows:

attachment:transcriptioninhibitionshorthand1_061120_dwk.PNG

An example showing A inhibiting the transcription of B follows:

attachment:transcriptioninhibitionshorthand2_061121_dwk.PNG

There are two right angles near the head. This can be more clearly seen when there is a longer edge.

attachment:transcriptioninhibitionshorthand4_061121_dwk.PNG

This use case differs from ../ShowInhibition in that the mechanism represented by ../TranscriptionInhibitionShorthand is inhibition of transcription, where as ../ShowInhibition can represent any mechanism of inhibition.

Requirements for Cytoscape

TBD

Importance

This has been used infrequently, and so is of a lower priority. ../ShowInhibition is usually sufficient.

Other Examples

Comments

Shared ../MimEditorUseCaseComments

BioPax representation TBD

PageComment2

Molecular_Interaction_Maps/TranscriptionInhibitionShorthand (last edited 2009-02-12 01:03:45 by localhost)

-  ← Revision 4 as of 2006-11-20 20:37:59 →
  Size: 2586
  Editor: lfrq80
  Comment:
+  ← Revision 5 as of 2006-11-21 22:04:34 →
  Size: 3209
  Editor: lfrq80
  Comment: Added details and better examples
-Deletions are marked like this.
+Additions are marked like this.
 Line 38:
+An example showing A inhibiting the transcription of B follows:



attachment:transcriptioninhibitionshorthand2_061121_dwk.PNG



There are two right angles near the head.  This can be more clearly seen when there is a longer edge.



attachment:transcriptioninhibitionshorthand4_061121_dwk.PNG



This use case differs from ../ShowInhibition in that the mechanism represented by ../TranscriptionInhibitionShorthand is inhibition of transcription, where as ../ShowInhibition can represent any mechanism of inhibition.
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+Line 57:
-TBD
+This has been used infrequently, and so is of a lower priority.  ../ShowInhibition is usually sufficient.