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| First, some tests. | [[TableOfContents]] |
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| Some links: | = Personal Info = |
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| * HelpContents |
My name is Márcio Rosa da Silva and you can contact me at: mmrsva (a) gmail com I am a PhD student at the [http://www.gbf.de/SystemsBiology Systems Biology group] of the [http://www.gbf.de German Research Center for Biotechnology] in [http://www.braunschweig.de Braunschweig], Germany. I work at [http://www.unisinos.br UNISINOS] (Universidade do Vale do Rio dos Sinos), a university in south of Brazil as an assistant professor. = Cytoscape work = == Plugins == I developed some plugins for Cytoscape. They can be downloaded from here: |
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| Docs: | == Other tools == |
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| * EclipseAndCytoscapeDevelopment | Are you a former user of Pajek that use Cytoscape now? Need to convert Pajek files to Cytoscape (including conversion of Pajek cluster files to Cytoscape node attributes)? See: [http://pynetconv.sourceforge.net pyNetConv] |
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| == Documents == | |
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| Some tests with code listings: | I have worked with many languages before, but Java is something new to me. I decided to learn it because I wanted to write plugins for Cytoscape. So I have run into some problems in the beginning, like: "how to start?" :-) So I decided to write some documents about this experience. I'll put this documents here at the wiki and in the '''csresources''' page. Up to now, I wrote only one. It can be found here: |
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{{{#!python for node in nodes: print node.getNeighbors() }}} |
* SettingUpEclipseForPluginDevelopment |
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{{{#!java for (int i=0; i<nodes.lenght;) { System.out.println(nodes[i].getLabel()) } }}} |
=== Drafts === |
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| Is HelpOnParsers/ReStructuredText supported on this wiki? |
* Cytoscape programming tips: CodeTips * Changing default behavior of MetaNodes plugin to show only one edge between metanodes: MetaNodesOneEdgeHack * Discussion about changing node views: ChangingNodeView * Is it possible to LoadAttributesFilesInsideJar? * How to make PluginsWithJython? |
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{{{#!rst Test of ``RST`` syntax: *italics*, **bold**... |
= Wiki Tips = |
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List: - test of list in RST - second item pre-formated text:: bla, bla, bla }}} No! :-) |
* If you want to find all pages linking to a page in the wiki, click on the title of the page. It will return a ''full text search'' of the title. |
Personal Info
My name is Márcio Rosa da Silva and you can contact me at: mmrsva (a) gmail com
I am a PhD student at the [http://www.gbf.de/SystemsBiology Systems Biology group] of the [http://www.gbf.de German Research Center for Biotechnology] in [http://www.braunschweig.de Braunschweig], Germany.
I work at [http://www.unisinos.br UNISINOS] (Universidade do Vale do Rio dos Sinos), a university in south of Brazil as an assistant professor.
Cytoscape work
Plugins
I developed some plugins for Cytoscape. They can be downloaded from here:
Other tools
Are you a former user of Pajek that use Cytoscape now? Need to convert Pajek files to Cytoscape (including conversion of Pajek cluster files to Cytoscape node attributes)? See: [http://pynetconv.sourceforge.net pyNetConv]
Documents
I have worked with many languages before, but Java is something new to me. I decided to learn it because I wanted to write plugins for Cytoscape. So I have run into some problems in the beginning, like: "how to start?" 
So I decided to write some documents about this experience. I'll put this documents here at the wiki and in the csresources page. Up to now, I wrote only one. It can be found here:
Drafts
Cytoscape programming tips: CodeTips
Changing default behavior of MetaNodes plugin to show only one edge between metanodes: MetaNodesOneEdgeHack
Discussion about changing node views: ChangingNodeView
Is it possible to LoadAttributesFilesInsideJar?
How to make PluginsWithJython?
Wiki Tips
If you want to find all pages linking to a page in the wiki, click on the title of the page. It will return a full text search of the title.