Diff for "IdekerLabProgress"

December 2009 Sprint

• Allow Nested Network Model by adding getNetwork/setNetwork methods to CyNode

• Network Browser - Network attr indicating its parents, node attr indicating its children
• File I/O support for nested networks (NNF Reader, XGMML Reader/Writer, and refactoring for session reader/writer)
• Network Editing - Add an icon in editor that allows a network to dropped on a node or on the canvas (where a node would be created)
• Network Editing - Add a right-click option to the node menu allowing a network to be added/removed
• Right click on a node menu option to jump to nested network
• Rendering - recursive rendering (a nested network will be rendered within the bounds of a node by a recursively defined renderer.) Assuming rendering only, NO user interaction

• Label Wrap - add an option to LabelPosition that allows a node/edge label width to be specified and automatically wraps lines when the text is longer than the width

• GenomeSpace analysis task requirements (due in Jan)

• Add new edge types to Cytoscape (dotted [circles, not dashes], dot-dash, ////, sine wave, parallel lines, ->->->->, parallel lines with single sided arrows)

• Editor - update editor instructions
• Editor - add check box that allows node id to be specified when node is dropped (mantis 2087)

• BioMart plugin maintenance

• A PSIQUIC client release (This works with 2.7)
• Maintenance release for Scripting plugins
• Select all nodes/edges is very slow
• Bug - Fiddling with default visual style and node label position broke all of the control panel.
• Add newlines in the attr browser by either adding \n manually or by typing alt-enter, some combination. Do whatever excel does. (mantis 2088) toggling between large networks can be slow (mantis 2068)

• Bug: In PluginManager Dialog, "Released by" field is missing for some installed plugins

• Bug: In Pluginmanager dialog, some plugins are labeled "out-of-date" incorrectly

January 2010 Sprint