DanielAbel/GsocProject - Cytoscape Wiki

Current state of DanielAbel's GSoC project.

Progress can also be tracked on the [http://daniel-abel.blogspot.com/ blog].

For detailed description, etc., see the original project proposal at DanielAbel/GoogleSummerofCode2008.

svn branches

in-development branches will be in dev/ while review-ready ones in review/

currently I have only one branch, for the edge directionality feature at:

next steps to do:

(not yet updated to reflect the two weeks of North America travel noted below)

(done) set up svn branches, eclipse, etc. (sometime before Maj. 26.)
(done) Maj. 28.: edge directionality unittests
(done, except xgmml-related) Maj. 30.: backend code needed for unittests to pass:
Jun. 6.: gui/plugins part of undirected edges (vizmapper, TableImport, etc.) (as these are gui-related things, I might not be able to create unittests for them, just as the rest of cytoscape's gui functionality is not really tested)
Jun. 10.: unittests for local attributes
Jun. 13.: local attributes unittests pass
Jun. 20.: updates in some parts of cytoscape gui to use local attributes
Jun. 22-Jun.28.: NetSci 2008, no work during this week
Jul. 4.: local attributes usable everywhere in default installation of cytoscape (i.e. core & core plugins)
Jul. 7: GSoC midterm. (although not milestone, important date)
Jul. 11.: benchmarks for rendering speed
Jul. 25.: backend changes needed for flexible line types
Jul. 31.: saving / exporting custom line types (XGMML and .cys)
Aug. 11.: vizmapper integration (using custom line types in preview dialog, etc.)

start coding on Maj. 26.
Jun. 23th to Jun. 27th: I will be attending the NetSci 2008 conference
July 14th to 20th: cytoscape retreat in Toronto
July 20th to 26th: visiting relatives in Washington DC (and thus I won't be working on GSoC during this week)