Diff for "DanielAbel/GsocProject"

Current state of DanielAbel's GSoC project.

Progress can also be tracked on the [http://daniel-abel.blogspot.com/ blog].

For detailed description, etc., see the original project proposal at DanielAbel/GoogleSummerofCode2008.

The edge-directionality part of the project is ready (in the sense that I consider it finished, but it still needs review and maybe modification). See DanielAbel/EdgeDirectionality for details

svn branches

I will create feature branches in svn+ssh://grenache.ucsd.edu/cellar/common/svn/cytoscape3/branches/abeld-gsoc

in-development branches will be in dev/ while review-ready ones in review/

currently I have only one branch, for the edge directionality feature at:

svn+ssh://grenache.ucsd.edu/cellar/common/svn/cytoscape3/branches/abeld-gsoc/dev/edge-directionality

TODO list

next steps to do:

• directedness in xgmml file format
• directedness related gui changes

Milestones

(not yet updated to reflect the two weeks of North America travel noted below)

• (done) set up svn branches, eclipse, etc. (sometime before Maj. 26.)
• (done) Maj. 28.: edge directionality unittests
• (done, except xgmml-related) Maj. 30.: backend code needed for unittests to pass:

• Jun. 6.: gui/plugins part of undirected edges (vizmapper, TableImport, etc.) (as these are gui-related things, I might not be able to create unittests for them, just as the rest of cytoscape's gui functionality is not really tested)

• Jun. 10.: unittests for local attributes
• Jun. 13.: local attributes unittests pass
• Jun. 20.: updates in some parts of cytoscape gui to use local attributes

• Jun. 22-Jun.28.: NetSci 2008, no work during this week

• Jul. 4.: local attributes usable everywhere in default installation of cytoscape (i.e. core & core plugins)

• Jul. 7: GSoC midterm. (although not milestone, important date)
• Jul. 11.: benchmarks for rendering speed
• Jul. 25.: backend changes needed for flexible line types
• Jul. 31.: saving / exporting custom line types (XGMML and .cys)
• Aug. 11.: vizmapper integration (using custom line types in preview dialog, etc.)

Implementation Plan

• write unittests
• merge changes from internal fork of earlier cytoscape
• for details, see text of proposal

Contact Info

Personal Schedules

• start coding on Maj. 26.

• Jun. 23th to Jun. 27th: I will be attending the NetSci 2008 conference

• July 14th to 20th: cytoscape retreat in Toronto
• July 20th to 26th: visiting relatives in Washington DC (and thus I won't be working on GSoC during this week)