Diff for "DanielAbel/GsocProject"

Differences between revisions 4 and 9 (spanning 5 versions)

Current state of DanielAbel's GSoC project.

Progress can also be tracked on the blog. Or not. apparently I am not a blogging type of guy.

For detailed description, etc., see the original project proposal at DanielAbel/GoogleSummerofCode2008.

The edge-directionality part of the project is ready (in the sense that I consider it finished, but it still needs review and maybe modification). See DanielAbel/EdgeDirectionality for details

My ideas and plans about supporting pluggable (node, edge) renderers are at DanielAbel/PluggableRenderers.

svn branches

I will create feature branches in svn+ssh://grenache.ucsd.edu/cellar/common/svn/cytoscape3/branches/abeld-gsoc

in-development branches will be in dev/ while review-ready ones in review/

currently I have only one branch, for the edge directionality feature at:

svn+ssh://grenache.ucsd.edu/cellar/common/svn/cytoscape3/branches/abeld-gsoc/dev/edge-directionality

TODO list

next steps to do:

directedness in xgmml file format
directedness related gui changes

Milestones

(done) set up svn branches, eclipse, etc. (sometime before Maj. 26.)
(done) Maj. 28.: edge directionality unittests
(done, except xgmml-related) Maj. 30.: backend code needed for unittests to pass:
(done) Jun. 6.: gui/plugins part of undirected edges (vizmapper, TableImport, etc.) (as these are gui-related things, I might not be able to create unittests for them, just as the rest of cytoscape's gui functionality is not really tested)
Jul. 14.: cytoscape retreat; proof-of-concept of pluggable renderers
Jul. 14 - 19.: cytoscape retreat in Toronto (likely no work during this)
July 20 - 27.: vacation in US, no work during this week
Aug. 4.: backend implementation of local attributes (big Attribute storage refactor)
Aug. 11.: gui fixes required for local attributes (end of GSoC coding period)

Implementation Plan

write unittests
merge changes from internal fork of earlier cytoscape
for details, see text of proposal

Contact Info

Personal Schedules

start coding on Maj. 26.
Jun. 23th to Jun. 27th: I will be attending the NetSci 2008 conference
July 14th to 20th: cytoscape retreat in Toronto
July 20th to 26th: visiting relatives in Washington DC (and thus I won't be working on GSoC during this week)

-  ← Revision 4 as of 2008-05-28 20:08:14 →
  Size: 2156
  Editor: csik
  Comment: update to reflect cytoscape retreat travel
+  ← Revision 9 as of 2009-02-12 01:03:37 →
  Size: 2433
  Editor: localhost
  Comment: converted to 1.6 markup
-Deletions are marked like this.
+Additions are marked like this.
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-Progress can also be tracked on the  [http://daniel-abel.blogspot.com/ blog].



== GSoC Project ==
+Progress can also be tracked on the  [[http://daniel-abel.blogspot.com/|blog]]. Or not. apparently I am not a blogging type of guy.
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+The edge-directionality part of the project is ready (in the sense that I consider it finished, but it still needs review and maybe modification). See DanielAbel/EdgeDirectionality for details



My ideas and plans about supporting pluggable (node, edge) renderers are at DanielAbel/PluggableRenderers.



== svn branches ==



I will create feature branches in

svn+ssh://grenache.ucsd.edu/cellar/common/svn/cytoscape3/branches/abeld-gsoc



in-development branches will be in dev/ while review-ready ones in review/



currently I have only one branch, for the edge directionality feature at:



svn+ssh://grenache.ucsd.edu/cellar/common/svn/cytoscape3/branches/abeld-gsoc/dev/edge-directionality
-Line 11:
+Line 24:
-Before coding period:

 * get svn account, checkout code, etc.

 * wait for merge of cytoscape 2.6 to cytoscape 3.0 branch
+next steps to do:



 * directedness in xgmml file format

 * directedness related gui changes
-Line 16:
+Line 30:
-(not yet updated to reflect the two weeks of North America travel noted below)
-Line 18:
+Line 31:
- * set up svn branches, eclipse, etc. (sometime before Maj. 26.)

 * Maj. 28.: edge directionality unittests

 * Maj. 30.: backend code needed for unittests to pass: 

 * Jun. 6.: gui/plugins part of undirected edges (vizmapper, TableImport, etc.) (as these are gui-related things, I might not be able to create unittests for them, just as the rest of cytoscape's gui functionality is not really tested)

 * Jun. 10.: unittests for local attributes

 * Jun. 13.: local attributes unittests pass

 * Jun. 20.: updates in some parts of cytoscape gui to use local attributes

 * Jun. 22-Jun.28.: NetSci 2008, no work during this week

 * Jul. 4.: local attributes usable everywhere in default installation of cytoscape (i.e. core & core plugins)

 * Jul. 7: GSoC midterm. (although not milestone, important date)

 * Jul. 11.: benchmarks for rendering speed

 * Jul. 25.: backend changes needed for flexible line types

 * Jul. 31.: saving / exporting custom line types (XGMML and .cys)

 * Aug. 11.: vizmapper integration (using custom line types in preview dialog, etc.)
+ * (done) set up svn branches, eclipse, etc. (sometime before Maj. 26.)

 * (done) Maj. 28.: edge directionality unittests

 * (done, except xgmml-related) Maj. 30.: backend code needed for unittests to pass: 

 * (done) Jun. 6.: gui/plugins part of undirected edges (vizmapper, TableImport, etc.) (as these are gui-related things, I might not be able to create unittests for them, just as the rest of cytoscape's gui functionality is not really tested)

 * Jul. 14.: cytoscape retreat; proof-of-concept of pluggable renderers

 * Jul. 14 - 19.: cytoscape retreat in Toronto (likely no work during this)

 * July 20 - 27.: vacation in US, no work during this week

 * Aug. 4.: backend implementation of local attributes (big Attribute storage refactor)

 * Aug. 11.: gui fixes required for local attributes (end of GSoC coding period)
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+Line 46:
-== Resources ==



 * will set up branches in svn once cytoscape2.6 changes have been merged to the 3.0 branch