Diff for "DanielAbel/GsocProject"

Differences between revisions 2 and 6 (spanning 4 versions)

Current state of DanielAbel's GSoC project.

Progress can also be tracked on the [http://daniel-abel.blogspot.com/ blog].

For detailed description, etc., see the original project proposal at DanielAbel/GoogleSummerofCode2008.

The edge-directionality part of the project is ready (in the sense that I consider it finished, but it still needs review and maybe modification). See DanielAbel/EdgeDirectionality for details

svn branches

I will create feature branches in svn+ssh://grenache.ucsd.edu/cellar/common/svn/cytoscape3/branches/abeld-gsoc

in-development branches will be in dev/ while review-ready ones in review/

currently I have only one branch, for the edge directionality feature at:

svn+ssh://grenache.ucsd.edu/cellar/common/svn/cytoscape3/branches/abeld-gsoc/dev/edge-directionality

TODO list

next steps to do:

directedness in xgmml file format
directedness related gui changes

Milestones

(not yet updated to reflect the two weeks of North America travel noted below)

(done) set up svn branches, eclipse, etc. (sometime before Maj. 26.)
(done) Maj. 28.: edge directionality unittests
(done, except xgmml-related) Maj. 30.: backend code needed for unittests to pass:
Jun. 6.: gui/plugins part of undirected edges (vizmapper, TableImport, etc.) (as these are gui-related things, I might not be able to create unittests for them, just as the rest of cytoscape's gui functionality is not really tested)
Jun. 10.: unittests for local attributes
Jun. 13.: local attributes unittests pass
Jun. 20.: updates in some parts of cytoscape gui to use local attributes
Jun. 22-Jun.28.: NetSci 2008, no work during this week
Jul. 4.: local attributes usable everywhere in default installation of cytoscape (i.e. core & core plugins)
Jul. 7: GSoC midterm. (although not milestone, important date)
Jul. 11.: benchmarks for rendering speed
Jul. 25.: backend changes needed for flexible line types
Jul. 31.: saving / exporting custom line types (XGMML and .cys)
Aug. 11.: vizmapper integration (using custom line types in preview dialog, etc.)

Implementation Plan

write unittests
merge changes from internal fork of earlier cytoscape
for details, see text of proposal

Contact Info

Personal Schedules

start coding on Maj. 26.
Jun. 23th to Jun. 27th: I will be attending the NetSci 2008 conference
July 14th to 20th: cytoscape retreat in Toronto
July 20th to 26th: visiting relatives in Washington DC (and thus I won't be working on GSoC during this week)

-  ← Revision 2 as of 2008-04-23 03:21:18 →
  Size: 719
  Editor: csik
  Comment: link blog from project page, too.
+  ← Revision 6 as of 2008-07-03 13:32:21 →
  Size: 2627
  Editor: csik
  Comment: add link to edge-directionality summary page
-Deletions are marked like this.
+Additions are marked like this.
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-The original project proposal is available at DanielAbel/GoogleSummerofCode2008.
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-== Timeline / TODO list ==
+For detailed description, etc., see the original project proposal at DanielAbel/GoogleSummerofCode2008.
-Line 9:
+Line 7:
-Before coding period:

 * get svn account, checkout code, etc.

 * wait for merge of cytoscape 2.6 to cytoscape 3.0 branch

During coding period:

 * implement edge directionality, backend (one week)

 * implement gui/plugins part of undirected edges (vizmapper, TableImport, etc.) (one week)

 * implement local attributes, backend part (one week)

 * implement gui/plugins part of local attributes (vizmapper, core plugins, etc.) (two weeks)

 * work on flexible line types
+The edge-directionality part of the project is ready (in the sense that I consider it finished, but it still needs review and maybe modification). See DanielAbel/EdgeDirectionality for details



== svn branches ==



I will create feature branches in

svn+ssh://grenache.ucsd.edu/cellar/common/svn/cytoscape3/branches/abeld-gsoc



in-development branches will be in dev/ while review-ready ones in review/



currently I have only one branch, for the edge directionality feature at:



svn+ssh://grenache.ucsd.edu/cellar/common/svn/cytoscape3/branches/abeld-gsoc/dev/edge-directionality



== TODO list ==



next steps to do:



 * directedness in xgmml file format

 * directedness related gui changes



== Milestones ==

(not yet updated to reflect the two weeks of North America travel noted below)



 * (done) set up svn branches, eclipse, etc. (sometime before Maj. 26.)

 * (done) Maj. 28.: edge directionality unittests

 * (done, except xgmml-related) Maj. 30.: backend code needed for unittests to pass: 

 * Jun. 6.: gui/plugins part of undirected edges (vizmapper, TableImport, etc.) (as these are gui-related things, I might not be able to create unittests for them, just as the rest of cytoscape's gui functionality is not really tested)

 * Jun. 10.: unittests for local attributes

 * Jun. 13.: local attributes unittests pass

 * Jun. 20.: updates in some parts of cytoscape gui to use local attributes

 * Jun. 22-Jun.28.: NetSci 2008, no work during this week

 * Jul. 4.: local attributes usable everywhere in default installation of cytoscape (i.e. core & core plugins)

 * Jul. 7: GSoC midterm. (although not milestone, important date)

 * Jul. 11.: benchmarks for rendering speed

 * Jul. 25.: backend changes needed for flexible line types

 * Jul. 31.: saving / exporting custom line types (XGMML and .cys)

 * Aug. 11.: vizmapper integration (using custom line types in preview dialog, etc.)



== Implementation Plan ==



 * write unittests

 * merge changes from internal fork of earlier cytoscape

 * for details, see text of proposal



== Contact Info ==



== Personal Schedules ==



 * start coding on Maj. 26.

 * Jun. 23th to Jun. 27th: I will be attending the NetSci 2008 conference

 * July 14th to 20th: cytoscape retreat in Toronto

 * July 20th to 26th: visiting relatives in Washington DC (and thus I won't be working on GSoC during this week)