TableOfContents

2008

January

Thursday January 2, 2008
Scooter, Gary, Alex, Ben, Sarah, Maital, Mike, Peng, Trey, Allan, Noel
Notes: Sarah

== Grant Proposal ==
  * Trey is trying to put together a P41 grant
      * Part 1: Development of new technology
      * Part 2: Collaborative activities
      * Part 3: Service
  * Need info on the collaborative research being done using Cytoscape, list the one or two most important scientific collaborations you have (coauthoring).  Include some text (paragraph) about the project.

== 2.6 ==
  * Bug fixing!
  * Mike will assign some bugs

== 2.5.2 ==
  * Mike put out a release right before xmas
  * Gary’s lab has tested it, most bugs look fixed
  * Ben has checked in a fix to graphics export formats
  * Mike will put together another release after this
  * Need people to run through the test cases

== 3.0 ==
  * Scooter is putting together a 2 layer interface proposal
  * Lowest layer uses ints (Mike’s initial API)
  * Plugin API is all object based, allows for lazy-loading of CyNode/CyEdge objects for large graphs
  * Plan to discuss CyAttributes next week

== Large Networks ==
  * Mike implemented a mysql backed implementation of the API he put together, works, uses less mem etc. Got stuck on CyNode/CyEdge being held in memory