Cytoscape_3/AppDeveloper/SettingUpAnIDE/CommandLine

Introduction

You need the following tools on your machine.

• JDK 6
• Apache Maven
• Subversion client

UNIX (e.g. Mac OS)/Linux

Checkout code from SVN

First, you need to check out Cytoscape 3 GUI distribution bundle:

% svn co http://chianti.ucsd.edu/svn/core3/gui-distribution/trunk/ gui-distribution

Compile

% cd gui-distribution
% mvn clean install

Run Application

% cd assembly/target/cytoscape
% cytoscape.sh

Windows

TBD

Issues

List any issues, conflict, or dependencies raised by this proposal

Comments

• See also: Interactive Shell

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