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Under the Network tab to the left, click or drag the mouse on the bird's eye view to move the main camera Under the Network tab to the left, click or drag the mouse on the bird's eye view display to move the main camera

3D Renderer

This is a plugin for Cytoscape 3 that attempts to render networks in 3D and integrate itself with VizMapper. Currently, it is still under development.

Current Features

  • Camera movement, rotation
  • Bird's eye view that can be clicked on to navigate the main camera
  • Node and edge manipulation (node dragging, selection, addition, removal)
  • Basic node shapes (spheres, cubes, tetrahedrons)
  • Node label text rendering

Download

(Link coming soon)

Camera Controls

Movement:

W

Move up

A

Move left

S

Move down

D

Move right

E

Move forward

Q

Move backward

Rotation:

Z

Roll camera clockwise

X

Roll camera counter-clockwise

Shift + Left

Rotate about Y-Axis, towards the left

Shift + Right

Rotate about Y-Axis, towards the right

Shift + Up

Rotate about X-Axis, upwards

Shift + Down

Rotate about X-Axis, downwards

First-person camera turning:

Left

Turn camera left

Right

Turn camera right

Up

Tilt camera upwards

Down

Tilt camera downwards

Network Manipulation Controls

Node, edge addition and removal:

N

Creates a new node under the mouse cursor

J

Creates a new edge between currently selected nodes and the node currently under the mouse cursor

Delete

Removes currently selected nodes and edges

Selection: Drag the mouse to select objects, or click on nodes to select them.

Node dragging: Hold CTRL and drag the mouse to move currently selected nodes.

Bird's eye view

Under the Network tab to the left, click or drag the mouse on the bird's eye view display to move the main camera

Currently Supported Visual Properties

Nodes:

  • Node fill color
  • Node shape
  • Node label

Edges:

  • Edge fill color

Planned Features

  • More complete set of supported visual properties
  • Integration with VizMapper's default style previewer/editor

Version History

January 24, 2012

v0.5: Initial beta release

Cytoscape_3/3D_Renderer (last edited 2012-03-29 21:34:52 by 192)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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