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| ||<|11> 1. Start Cytoscape 2. Import a network file (eg. galFiltered.gml) 3. Click on Layout from the toolbar||L7.1||Select Cytoscape Layouts → Inverted Self-Organising Map Layout||Nodes are clustered but not overlapping extensively. Edges are fairly long and angular with <90° angles|| || ||June 4th 09||P|| | ||<|11> 1. Start Cytoscape <<BR>>2. Import a network file (eg. galFiltered.gml) <<BR>>3. Click on Layout from the toolbar||L7.1||Select Cytoscape Layouts → Inverted Self-Organising Map Layout||Nodes are clustered but not overlapping extensively. Edges are fairly long and angular with <90° angles|| || ||June 4th 09||P|| |
UI Test Cases for Layout Menu - Cytoscape Layouts
Preconditions |
Test Case ID |
Instructions |
Expected Results |
Windows |
Mac |
||
Date Executed |
Pass/Fail |
Date Executed |
Pass/Fail |
||||
1. Start Cytoscape |
L7.1 |
Select Cytoscape Layouts → Inverted Self-Organising Map Layout |
Nodes are clustered but not overlapping extensively. Edges are fairly long and angular with <90° angles |
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June 4th 09 |
P |
L7.2 |
Select Cytoscape Layouts → Edge-weighted Force directed (BioLayout) → (unweighted) |
Edges are very long and nodes overlap. Network arranged in arrow or comet shape |
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June 4th 09 |
P |
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L7.3 |
Select Cytoscape Layouts → Degree Sorted Circle Layout → All Nodes |
The nodes of the main network are arranged at a locus equidistant from the centre of the circle and sorted numerically according to Degree starting at the bottom of the circle going clockwise |
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June 4th 09 |
P |
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L7.4 |
Select Cytoscape Layouts → Grid Layout → All Nodes |
The nodes should be arranged in an almost square grid |
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June 4th 09 |
P |
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L7.5 |
Select Cytoscape Layouts → Attribute Circle Layout → canonicalName |
The nodes of the main network are arranged at a locus equidistant from the centre of the circle and sorted alphabetically according to canonicalName starting at the bottom of the circle going anti-clockwise |
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June 4th 09 |
P |
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L7.6 |
Select Cytoscape Layouts → Circular Layout |
Some of the nodes from the main network form a circle with branches off it |
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June 4th 09 |
P |
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L7.7 |
Select Cytoscape Layouts → Group Attributes Layout → All Nodes → canonicalName |
Nodes are arranged in a grid close to other nodes with similar canonicalName distributed alphanumerically |
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June 4th 09 |
P |
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L7.8 |
Select Cytoscape Layouts → Force-Directed Layout → (unweighted) |
Layout appears similar to Organic yFiles layout. Nodes and edges arranged to minimise force between them |
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June 4th 09 |
P |
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L7.9 |
Select Cytoscape Layouts → Edge-weighted Spring Embedded → (unweighted) |
Layout appears similar to Organic yFiles layout. Nodes and edges arranged to minimise force between them in an unweighted manner |
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June 4th 09 |
P |
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L7.10 |
Select Cytoscape Layouts → Spring Embedded → All Nodes |
Layout appears similar to Organic yFiles layout. Nodes and edges arranged to minimise force between them |
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June 4th 09 |
P |
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L7.11 |
Select Cytoscape Layouts → Hierarchical → All Nodes |
The graph should resemble a family tree, many of the edges have more than one angled bend |
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June 4th 09 |
P |
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