Differences between revisions 10 and 11
← Revision 10 as of 2007-11-15 19:04:02 →
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Editor: nebbiolo
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← Revision 11 as of 2007-11-19 19:32:26 →
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Editor: KristinaHanspers
Comment:
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=== Tool Bar  === === Tool Bar ===
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 2. Click File -> New -> Session
 3. Load a network.
 4. Click File -> New -> Session
 5. Click yes.
 6. Repeat, Click no. 		 1. Click File -> New -> Session
 1. Load a network.
 1. Click File -> New -> Session
 1. Click yes.
 1. Repeat, Click no.
''Expected Results''
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''Expected Results''
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 4. You should be prompted with a dialog that reminds you that your current session will be lost. 
 5. If you click yes, you should get a new session with no networks in the network manager.  
 6. When you click no, you should see your existing session without any changes.
 		 2. You should be prompted with a dialog that reminds you that your current session will be lost.
 2. If you click yes, you should get a new session with no networks in the network manager.
 2. When you click no, you should see your existing session without any changes.
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 2. Click File -> New -> Network -> Empty Network  1. Click File -> New -> Network -> Empty Network
''Expected Results''
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''Expected Results''
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 2. Click File -> New -> Network -> Construct network using cPath...
 3. Type the example "p53" into the cPath dialog.
 4. Change the species drop-down menu to "Homo Sapiens"
 5. Click Help then close the Help dialog.
 6. Click About the close the About dialog.
 7. Click Search.
 8. Click the "X" in the dialog frame to close the cPath dialog. 		 1. Click File -> New -> Network -> Construct network using cPath...
 1. Type the example "p53" into the cPath dialog.
 1. Change the species drop-down menu to "Homo Sapiens"
 1. Click Help then close the Help dialog.
 1. Click About the close the About dialog.
 1. Click Search.
 1. Click the "X" in the dialog frame to close the cPath dialog.
''Expected Results''
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''Expected Results''
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 5. Another dialog should be displayed with text describing the features of the cPath dialog.
 6. Another dialog should be displayed with text describing the authors of the software.
 7. A network should be loaded with more than one node.
 8. The dialog should close.
 		 2. Another dialog should be displayed with text describing the features of the cPath dialog.
 2. Another dialog should be displayed with text describing the authors of the software.
 2. A network should be loaded with more than one node.
 2. The dialog should close.
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 2. Load a network.
 3. Lay the network out in something other than a grid. 
 4. Change the visual style to something other than default.
 5. Click File -> New -> Network -> Clone current network.
  		 1. Load a network.
 1. Lay the network out in something other than a grid.
 1. Change the visual style to something other than default.
 1. Click File -> New -> Network -> Clone current network.
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 5. You should see a new network with the same name as the previous network, but with the word " Copy" appended to it. This view should have the exact same node layout and visual style as the original network.
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 5. You should see a new network with the same name as the previous network, but with the word " Copy" appended to it. This view should have the exact same node layout and visual style as the original network.
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 2. Load Network.
 3. Make sure that NO nodes or edges are selected (i.e. click on the view somewhere other than on a node or edge).
 4. Click File -> New -> Network -> From selected nodes, all edges.
 5. Select some nodes and edges in the view.
 6. Click File -> New -> Network -> From selected nodes, all edges. 		 1. Load Network.
 1. Make sure that NO nodes or edges are selected (i.e. click on the view somewhere other than on a node or edge).
 1. Click File -> New -> Network -> From selected nodes, all edges.
 1. Select some nodes and edges in the view.
 1. Click File -> New -> Network -> From selected nodes, all edges.
''Expected Results''
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''Expected Results''
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 6. A new network and view should be created. The nodes should have the same layout as the parent network.     4. A new network and view should be created. The nodes should have the same layout as the parent network.
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 2. Load Network.
 3. Make sure that NO nodes or edges are selected (i.e. click on the view somewhere other than on a node or edge).
 4. Click File -> New -> Network -> From selected nodes, selected edges.
 5. Click Select -> Mouse Drag Selects -> Nodes Only.
 6. Select some nodes in the view.
 7. Click File -> New -> Network -> From selected nodes, selected edges. 		 1. Load Network.
 1. Make sure that NO nodes or edges are selected (i.e. click on the view somewhere other than on a node or edge).
 1. Click File -> New -> Network -> From selected nodes, selected edges.
 1. Click Select -> Mouse Drag Selects -> Nodes Only.
 1. Select some nodes in the view.
 1. Click File -> New -> Network -> From selected nodes, selected edges.
''Expected Results''
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''Expected Results''
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 7. A new network and view should be created. This network should only include the selected nodes and no edges. This network will be laid out in the default grid layout.
 		 4. A new network and view should be created. This network should only include the selected nodes and no edges. This network will be laid out in the default grid layout.
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'''''Kristina''''' ==== Plugins -> Manage Plugins -> Install ====
''Procedure''

 1. Start Cytoscape
 1. Click Plugins -> Manage Plugins.
 1. In the Manage Plugins window, expand the Currently Installed folder by double-clicking the folder icon, then expand the Core folder by clicking on the arrow symbol next to it.
 1. Select any of the plugins listed by clicking on it.
 1. Expand the Available for Install folder.
 1. Select any plugin that is not already installed. Click the Install button.
''Expected Results ''

 1. The Manage Plugins window should open with folder Currently Installed and Available for Install in the left panel. The first time Manage Plugins is selected in an instance of Cytoscape, a connection status window should open before the Manage Plugins window appears.
 1. Under Currently Installed and Available for Install there should be subfolders listing individual plugins.
 1. When clicking on a plugin, information about the plugin should appear in the right panel.
 1. During plugin installation, you should get an installation progress window. When installation is complete, a message in red should be displayed under the left panel: “BubbleRouter install complete”.
 1. The newly installed plugin should be visible under Currently Installed folder.
==== Plugins -> Manage Plugins -> Change Download Site ====
''Procedure''

 1. In the Plugin Manager window, click the Change Download Site button.''' '''
 1. In the drop-down menu, change the download site to Test and then click the Ok button.
 1. In the Manage Plugin main window, click the Change Download Site button again.
 1. In the Plugin Download Sites window, click the Add Site button.
 1. Click the Add button.
 1. Type in a name and a URL (any) and click OK.
 1. Click OK to exit the Bookmark Manager. Click OK in the Plugin Download Sites window to get back to the Plugin Manager main window. Click the Close button to exit the Plugin Manager and close Cytoscape.
''Expected Results''

 1. A Plugin Download Sites window will appear with a drop-down menu for selecting download site.
 1. A progress bar should appear. When the download site has been switched, you should see a different folder structure under Available for Install.
 1. When selecting the Add Site button in the Plugin Download Sites window, a Bookmark manager window will appear.
 1. When clicking Add in the Bookmark manager, an Add new bookmark window will appear.
 1. After adding a new site, the new download site will appear in the list of Bookmarks.
==== Plugins -> Update Plugins ====
''Procedure''

 1. Start Cytoscape
 1. Click Plugins -> Update Plugins
''Expected Results''

 1. A progress window will appear informing you of the status of updates. If no updates are available for installed plugins, a message will appear telling you that no updates where available.
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The goal of this section is to verify that the various [:Workflows: workflows] described for Cytoscape do actually work. In addition to the workflows described, we will also verify that each [:Presentations: tutorial] also works. The output of these tests will be different than simply a checklist. The goal is to capture the steps in the workflow in a screencapture movie. The movie should capture the screen as a user follows each step in the workflow or tutorial. Audio commentary is preferred since this allows to both see and hear the steps being followed. The goal of this section is to verify that the various [:Workflows:workflows] described for Cytoscape do actually work. In addition to the workflows described, we will also verify that each [:Presentations:tutorial] also works. The output of these tests will be different than simply a checklist. The goal is to capture the steps in the workflow in a screencapture movie. The movie should capture the screen as a user follows each step in the workflow or tutorial. Audio commentary is preferred since this allows to both see and hear the steps being followed.

The Cytoscape Test Plan

The purpose of this document is to describe testing procedures to ensure that new releases of Cytoscape do not break existing functionality. The release is broken down into two general sections: Coverage Testing and Workflow Testing.

Coverage Testing

This section describes tests for Cytoscape that must be run by hand.

Tool Bar

Kristina

File Menu

Mike File -> New through File -> Save As

File -> New -> Session

Procedure

  1. Start Cytoscape.

  2. Click File -> New -> Session

  3. Load a network.

  4. Click File -> New -> Session

  5. Click yes.
  6. Repeat, Click no.

Expected Results

  1. Nothing should happen because no networks have been loaded, there is no session yet.
  2. You should be prompted with a dialog that reminds you that your current session will be lost.
  3. If you click yes, you should get a new session with no networks in the network manager.
  4. When you click no, you should see your existing session without any changes.

File -> New -> Network -> Empty Network

Procedure

  1. Start Cytoscape.

  2. Click File -> New -> Network -> Empty Network

Expected Results

  1. An empty network and view should be created. The Control Panel should be changed to the Editor Tab.

File -> New -> Network -> Construct network using cPath...

Procedure

  1. Start Cytoscape.

  2. Click File -> New -> Network -> Construct network using cPath...

  3. Type the example "p53" into the cPath dialog.
  4. Change the species drop-down menu to "Homo Sapiens"
  5. Click Help then close the Help dialog.
  6. Click About the close the About dialog.
  7. Click Search.
  8. Click the "X" in the dialog frame to close the cPath dialog.

Expected Results

  1. The cPath dialog should appear.
  2. Another dialog should be displayed with text describing the features of the cPath dialog.
  3. Another dialog should be displayed with text describing the authors of the software.
  4. A network should be loaded with more than one node.
  5. The dialog should close.

File -> New -> Network -> Clone current network

Procedure

  1. Start Cytoscape.
  2. Load a network.
  3. Lay the network out in something other than a grid.
  4. Change the visual style to something other than default.

  5. Click File -> New -> Network -> Clone current network.

Expected Results

  1. You should see a new network with the same name as the previous network, but with the word " Copy" appended to it. This view should have the exact same node layout and visual style as the original network.

File -> New -> Network -> From selected nodes, all edges

Procedure

  1. Start Cytoscape.
  2. Load Network.
  3. Make sure that NO nodes or edges are selected (i.e. click on the view somewhere other than on a node or edge).

  4. Click File -> New -> Network -> From selected nodes, all edges.

  5. Select some nodes and edges in the view.

  6. Click File -> New -> Network -> From selected nodes, all edges.

Expected Results

  1. You shouldn't be able to click this option because it should be grayed out. This is because no nodes or edges are currently selected.
  2. A new network and view should be created. The nodes should have the same layout as the parent network.

File -> New -> Network -> From selected nodes, selected edges

Procedure

  1. Start Cytoscape.
  2. Load Network.
  3. Make sure that NO nodes or edges are selected (i.e. click on the view somewhere other than on a node or edge).

  4. Click File -> New -> Network -> From selected nodes, selected edges.

  5. Click Select -> Mouse Drag Selects -> Nodes Only.

  6. Select some nodes in the view.

  7. Click File -> New -> Network -> From selected nodes, selected edges.

Expected Results

  1. You shouldn't be able to click this option because it should be grayed out. This is because no nodes or edges are currently selected.
  2. A new network and view should be created. This network should only include the selected nodes and no edges. This network will be laid out in the default grid layout.

Edit Menu

View Menu

Piet

Select Menu

Piet

Layout Menu

Plugins Menu

Plugins -> Manage Plugins -> Install

Procedure

  1. Start Cytoscape

  2. Click Plugins -> Manage Plugins.

  3. In the Manage Plugins window, expand the Currently Installed folder by double-clicking the folder icon, then expand the Core folder by clicking on the arrow symbol next to it.
  4. Select any of the plugins listed by clicking on it.
  5. Expand the Available for Install folder.
  6. Select any plugin that is not already installed. Click the Install button.

Expected Results

  1. The Manage Plugins window should open with folder Currently Installed and Available for Install in the left panel. The first time Manage Plugins is selected in an instance of Cytoscape, a connection status window should open before the Manage Plugins window appears.
  2. Under Currently Installed and Available for Install there should be subfolders listing individual plugins.
  3. When clicking on a plugin, information about the plugin should appear in the right panel.

  4. During plugin installation, you should get an installation progress window. When installation is complete, a message in red should be displayed under the left panel: “BubbleRouter install complete”.

  5. The newly installed plugin should be visible under Currently Installed folder.

Plugins -> Manage Plugins -> Change Download Site

Procedure

  1. In the Plugin Manager window, click the Change Download Site button.

  2. In the drop-down menu, change the download site to Test and then click the Ok button.
  3. In the Manage Plugin main window, click the Change Download Site button again.
  4. In the Plugin Download Sites window, click the Add Site button.
  5. Click the Add button.
  6. Type in a name and a URL (any) and click OK.
  7. Click OK to exit the Bookmark Manager. Click OK in the Plugin Download Sites window to get back to the Plugin Manager main window. Click the Close button to exit the Plugin Manager and close Cytoscape.

Expected Results

  1. A Plugin Download Sites window will appear with a drop-down menu for selecting download site.
  2. A progress bar should appear. When the download site has been switched, you should see a different folder structure under Available for Install.
  3. When selecting the Add Site button in the Plugin Download Sites window, a Bookmark manager window will appear.
  4. When clicking Add in the Bookmark manager, an Add new bookmark window will appear.
  5. After adding a new site, the new download site will appear in the list of Bookmarks.

Plugins -> Update Plugins

Procedure

  1. Start Cytoscape

  2. Click Plugins -> Update Plugins

Expected Results

  1. A progress window will appear informing you of the status of updates. If no updates are available for installed plugins, a message will appear telling you that no updates where available.

Help Menu

Control Panel - Network

Control Panel - VizMapper

Control Panel - Editor

Control Panel - Filters

Data Panel - Node, Edge, and Attribute Browser

Workflow Testing

The goal of this section is to verify that the various [:Workflows:workflows] described for Cytoscape do actually work. In addition to the workflows described, we will also verify that each [:Presentations:tutorial] also works. The output of these tests will be different than simply a checklist. The goal is to capture the steps in the workflow in a screencapture movie. The movie should capture the screen as a user follows each step in the workflow or tutorial. Audio commentary is preferred since this allows to both see and hear the steps being followed.

CytoscapeTesting (last edited 2009-05-07 15:09:43 by 142)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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