Diff for "CytoscapeRetreat2008/Gang"

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Presenter: Gang Su, Bioinformatics Program, University of Michigan, USA

http://suganglog.blogspot.com/

Title: Normalizing Visualization with Hierarchical Community Structure

Abstract:

I have implemented two community structure algorithms, fast-greedy and fast-greedy w/consolidation ratio into a cytoscape plugin 'GLay'. This plugin allow user to partition an input graph into clusters which maximizes intra-cluster edge density and minimizes inter-cluster edge density w.r.t. a random erdos-renyi graph. These clusters may imply biological complexes or pathways.
A miniposter demonstrating the GUI is attached below.

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+I have implemented two community structure algorithms, fast-greedy and fast-greedy w/consolidation ratio into a cytoscape plugin 'GLay'. This plugin allow user to partition an input graph into clusters which maximizes intra-cluster edge density and minimizes inter-cluster edge density w.r.t. a random erdos-renyi graph. These clusters may imply biological complexes or pathways.

A miniposter demonstrating the GUI is attached below.