Day 1
MIM discussion
- Based on ["Molecular Interaction Maps"]
- Allan began by presenting his mapping from MIM shapes to Cytoscape graphical elements.
- Need to map MIM to both model and view
- How to represent 'non covalent binding'?
- Model: Best mapped to a group. A and B are connected and are part of the group.
- View: this is a use case for the group view
- Asymmetric binding
- Model: Regular edge between A and B, just needs a specific edge type
- View:
- General constraints on layout for automatic layout and the editor
- Snap to grid
- All lines need to be routed with only right angles
Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.
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