Cytoscape Wiki|
← Revision 1 as of 2006-10-12 17:06:43 →
Size: 171
Comment:
|
Size: 669
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 4: | Line 4: |
|
* Based on ["Molecular Interaction Maps"] * Allan began by presenting his mapping from MIM shapes to Cytoscape graphical elements. |
* Allan began by presenting his mapping from MIM shapes to Cytoscape graphical elements, presented on ["Molecular Interaction Maps"]. * Need to map MIM to both model and view * How to represent 'non covalent binding'? * Model: Best mapped to a group. A and B are connected and are part of the group. * View: this is a use case for the group view * Asymmetric binding * Model: Regular edge between A and B, just needs a specific edge type * View: * General constraints on layout for automatic layout and the editor * Snap to grid * All lines need to be routed with only right or acute angles * |
Day 1
MIM discussion
- Allan began by presenting his mapping from MIM shapes to Cytoscape graphical elements, presented on ["Molecular Interaction Maps"].
- Need to map MIM to both model and view
- How to represent 'non covalent binding'?
- Model: Best mapped to a group. A and B are connected and are part of the group.
- View: this is a use case for the group view
- Asymmetric binding
- Model: Regular edge between A and B, just needs a specific edge type
- View:
- How to represent 'non covalent binding'?
- General constraints on layout for automatic layout and the editor
- Snap to grid
- All lines need to be routed with only right or acute angles