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This is the most common usecase for this plugin. Supporse users have their own data sets (networks) and want to integrate them with other network data sets available from public databases. This plugin can easily handle this problem. === Data Source === * User network (sif, XGMML, etc.) * Known interaction data sets from public database * IntAct * NCBI Entrez Gene - interaction datasets are taken from HPRD, BioGRID, and BioGRID * PathwayCommons * Annotations === Required Plugins === * PathwayCommons web service client * IntAct web service client * NCBI Entrez Gene web service client * Biomart plugin |
Introduction
This is a tutorial how to merge multiple networks from multiple data sources by Advanced Network Merge Plugin.
Examples with Real Data Sets
Scinario 1: Merge existing network file and network imported from web service
This is the most common usecase for this plugin. Supporse users have their own data sets (networks) and want to integrate them with other network data sets available from public databases. This plugin can easily handle this problem.
Data Source
- User network (sif, XGMML, etc.)
- Known interaction data sets from public database
- NCBI Entrez Gene - interaction datasets are taken from HPRD, BioGRID, and BioGRID
- Annotations
Required Plugins
PathwayCommons web service client
IntAct web service client
- NCBI Entrez Gene web service client
- Biomart plugin
Scinario 2: Merge known pathways onto human interactome data set
Data Source