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== Introduction ==
[[http://cytoscape.org|{{attachment:logo_small.gif|http://cytoscape.org}}]]
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[[http://www.cytoscape.org|Cytoscape]] is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data. {{attachment:cy3logo.png|http://cytoscape.org}}
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[[http://www.cytoscape.org|Cytoscape]] is an open source platform for network data integration, analysis, and visualization. ([[http://www.cytoscape.org/what_is_cytoscape.html|Read more about Cytoscape...]])

== About Cytoscape Wiki ==
This is a wiki for both Cytoscape users and developers. If you find problems, or have suggestions, [[https://groups.google.com/forum/?fromgroups#!forum/cytoscape-discuss|please let us know]].

=== How to Edit ===
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----
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== Using Cytoscape ==
 * [[Cytoscape_User_Manual|User Manual]]: Development draft
 * [[Data_Sets|Exampledata sets]] to use in Cytoscape
== Quick Links ==
=== For Users ===
 * [[http://www.cytoscape.org/|Cytoscape Web Site]]
 * [[http://apps.cytoscape.org/|Cytoscape App Store]]
 * [[http://www.cytoscape.org/releasenotes.html|Release Notes]]
 * [[https://speakerdeck.com/cytoscape|Presentation Slides]]

=== For Developers ===
 * [[http://code.cytoscape.org/|code.cytoscape.org]] - Start page for core developers
 * [[https://github.com/cytoscape|Cytoscape Consortium GitHub Account]]
 * Javadoc
    * [[http://chianti.ucsd.edu/cytoscape-3.0.1/API/|Latest Release: 3.0.1]]
    * [[https://code.cytoscape.org/jenkins/job/cytoscape-3-javadoc/lastBuild/javadoc/|Latest Development Version: 3.1.0-SNAPSHOT]]

----

== For Users ==
=== Manual ===
 * [[http://cytoscape.org/manual/Cytoscape2_8Manual.html|2.x]]
 * [[http://www.cytoscape.org/manual/Cytoscape3_0_1Manual.pdf|3.x]]

 * [[Data_Sets|Example data sets]] to use in Cytoscape
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== Cytoscape 3 User Documents ==
 * [[Cytoscape_3/UserManual|User Manual]]: 3.0.0 development draft
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== Developing Cytoscape == == For Developers ==

=== Cytoscape 3.x Development ===
 * [[Cytoscape_3|Cytoscape 3.x Development]]

 * [[Outdated_Cytoscape_3.0/Mini_Retreat2|Mini Retreat: March 4, 2011 at UCSD]]
 * [[Cytoscape_3/MiniRetreat2012|Mini Retreat: Feb. 23, 2012 at UCSD (Cytoscape 3 pre-release discussion)]]
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=== Cytoscape 3 Development ===
 * [[Cytoscape_3|Cytoscape 3.0 Development]]
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 * [[Outdated_Cytoscape_3.0/Mini_Retreat2|Mini Retreat: March 4, 2011 at UCSD]]
 * [[Cytoscape_3/MiniRetreat2012|Mini Retreat: Feb. 23, 2012 at UCSD (Cytoscape 3 pre-release discussion)]]

== Testing Cytoscape ==
=== Testing Cytoscape ===

http://cytoscape.org

Cytoscape is an open source platform for network data integration, analysis, and visualization. (Read more about Cytoscape...)

About Cytoscape Wiki

This is a wiki for both Cytoscape users and developers. If you find problems, or have suggestions, please let us know.

How to Edit


For Users

For Developers


For Users

Manual

For Developers

Cytoscape 3.x Development

Cytoscape 2.x Development

Testing Cytoscape

Welcome (last edited 2016-04-26 22:30:33 by server2)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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