'''''This page has been retired in favor of this one: [[Cytoscape_2.5]]. See that page for the most current updates.'''' === Brainstorm of Topics === '''UCSF''' * Layout Manager / Broker - '''Scooter''' - 2.5 * Remove Deprecation Warnings - '''Scooter''' - 2.5, ongoing * Groups (formerly known as metanodes) - '''UCSF, Agilent''' - 2.5 '''Agilent''' * Hyperedges - '''Aglient''' - 2.5 * Document Event Handling - '''Mike Creech, Allan K, Ben Gross''' (write Doclets) '''UCSD''' * Vizmap Redesign UI - '''UCSD''' - 2.5 '''Kei''' * Linkout from Attribute Browser - '''Kei''' - 2.5 * Plugin Website - '''UCSD''' - 2.5+ '''Peng''' * Memory Mgt - '''Mike Smoot''' - 2.5 * GINY Refactoring - '''Chief Architect - ''Mike Smoot''''' - beyond * Properties / XML Config - '''Kei, Scooter''' - 2.5+ * Automatic Plugin Import - '''Peng, Sarah''' - 2.5 * Vizmap API - '''Mike Smoot, Sarah''' - 2.6 '''MSKCC''' * Cytoscape Calss Cleanup - '''Ethan''' - 2.5 * CyAttributes Name Clashes - '''Ethan''' - 2.5 * Pathway Commons Connectivity - '''MSKCC, Gary''' - (website 2.5) * Filters - '''Ethan, Mike Smoot''' - 2.5 * Combining Attributes / Formulas - '''Ethan, Scooter, Alex''' - 2.6 '''ISB''' * Library Reduction / Cleanup - '''Sarah''' - 2.5 * Web Services / Database Connectivity Guidelines - '''Sarah, Alex''' - 2.5 '''Pasteur''' * Usability Assessment - '''Pasteur, Sarah, M. X''' - ongoing '''Piet, AMC''' * Performance Profiling - '''Piet''' - ongoing * Testing - '''Piet, Tero''' - 2.5 * Undo Manager - '''Piet, Peng''' - ongoing '''Collective Leadership''' * Interactive Layout (Bubble, Snap-To) - '''Alex, Allan K, Ben''' - 2.5 * Layers / Annotation / UI for cutsom nodes - '''Alex, Allan K, Ben''' - 2.5 * Custom Node / Edge Graphics - '''MIM?, UCSF, Allan K, Ben''' - 2.6 * Papers - '''All''' - ongoing '''Unassigned''' * Tutorials - '''Outreach Officer''' * Website Content Update - '''Webmaster''' * generate list of content that requires update to help distribute task * create cyto-helpdesk and advertise it === Overall Themes === 1. Pathway / Annnotation 1. Usability 1. Navigation / Find === Cytoscape Offices === * Chief Architect = '''''Mike Smoot''''' * Outreach Officer = ''back to the board, possible split up the tasks'' * Webmaster = ''...anyone?... Gary can offer some restructuring of wiki; undergrad plus supervisor''