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<!> '''''This page has been retired in favor of this one: [:Cytoscape_2.5]. See that page for the most current updates.'''' <!>
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 * Vizmap Redesign UI - '''UCSD''' - 2.6  * Vizmap Redesign UI - '''UCSD''' - 2.5 '''Kei'''
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 * Plugin Website - '''UCSD''' - 2.5+  * Plugin Website - '''UCSD''' - 2.5+ '''Peng'''
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 * Properties / XML Config - '''Kei, Scooter''' - 2.5
 * Automatic Plugin Import - '''UCSD, Sarah''' - 2.5 		 * Properties / XML Config - '''Kei, Scooter''' - 2.5+
 * Automatic Plugin Import - '''Peng, Sarah''' - 2.5

<!> This page has been retired in favor of this one: [:Cytoscape_2.5]. See that page for the most current updates.' <!>

Brainstorm of Topics

UCSF

  • Layout Manager / Broker - Scooter - 2.5

  • Remove Deprecation Warnings - Scooter - 2.5, ongoing

  • Groups (formerly known as metanodes) - UCSF, Agilent - 2.5

Agilent

  • Hyperedges - Aglient - 2.5

  • Document Event Handling - Mike Creech, Allan K, Ben Gross (write Doclets)

UCSD

  • Vizmap Redesign UI - UCSD - 2.5 Kei

  • Linkout from Attribute Browser - Kei - 2.5

  • Plugin Website - UCSD - 2.5+ Peng

  • Memory Mgt - Mike Smoot - 2.5

  • GINY Refactoring - Chief Architect - Mike Smoot - beyond

  • Properties / XML Config - Kei, Scooter - 2.5+

  • Automatic Plugin Import - Peng, Sarah - 2.5

  • Vizmap API - Mike Smoot, Sarah - 2.6

MSKCC

  • Cytoscape Calss Cleanup - Ethan - 2.5

  • CyAttributes Name Clashes - Ethan - 2.5

  • Pathway Commons Connectivity - MSKCC, Gary - (website 2.5)

  • Filters - Ethan, Mike Smoot - 2.5

  • Combining Attributes / Formulas - Ethan, Scooter, Alex - 2.6

ISB

  • Library Reduction / Cleanup - Sarah - 2.5

  • Web Services / Database Connectivity Guidelines - Sarah, Alex - 2.5

Pasteur

  • Usability Assessment - Pasteur, Sarah, M. X - ongoing

Piet, AMC

  • Performance Profiling - Piet - ongoing

  • Testing - Piet, Tero - 2.5

  • Undo Manager - Piet, Peng - ongoing

Collective Leadership

  • Interactive Layout (Bubble, Snap-To) - Alex, Allan K, Ben - 2.5

  • Layers / Annotation / UI for cutsom nodes - Alex, Allan K, Ben - 2.5

  • Custom Node / Edge Graphics - MIM?, UCSF, Allan K, Ben - 2.6

  • Papers - All - ongoing

Unassigned

  • Tutorials - Outreach Officer

  • Website Content Update - Webmaster

    • generate list of content that requires update to help distribute task
    • create cyto-helpdesk and advertise it

Overall Themes

  1. Pathway / Annnotation
  2. Usability
  3. Navigation / Find

Cytoscape Offices

  • Chief Architect = Mike Smoot

  • Outreach Officer = back to the board, possible split up the tasks

  • Webmaster = ...anyone?... Gary can offer some restructuring of wiki; undergrad plus supervisor

RoadMap2006 (last edited 2009-02-12 01:03:28 by localhost)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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