R2 and Cytoscape: Inferring gene targets by graph based integration and analysis of molecular biological data

Piet Molenaar

Academic Medical Center, University of Amsterdam, the Netherlands

Recipe

_Plugins to Load_: Network and Attribute I/O, Network Inference, Functional Enrichment

  1. Open website:

  2. Logon with: un pw -> if problem switch to ppt

  3. Click

Data Files: Use the notch timeseries (Piet: refine this)

Presentation: TBD

Webstart: Time permitting

Video: Time permitting

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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