Publications about Cytoscape

Integration of biological networks and gene expression data using CytoscapeBRCline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GDBR[http://www.nature.com/nprot/journal/v2/n10/abs/nprot.2007.324.html Nat Protoc. 2007;2(10):2366-82]BR[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17947979 PubMed Abstract]BR

Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction NetworksBRRowan Christmas, Iliana Avila-Campillo, Hamid Bolouri, Benno Schwikowski, Mark Anderson, Ryan Kelley, Nerius Landys, Chris Workman, Trey Ideker, Ethan Cerami, Rob Sheridan, Gary D. Bader, and Chris SanderBR[http://educationbook.aacrjournals.org/cgi/content/full/2005/1/12 Am Assoc Cancer Res Educ Book 2005: 12-16]BR

Cytoscape: a software environment for integrated models of biomolecular interaction networks. BR Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. BR [http://www.genome.org/cgi/content/full/13/11/2498 Genome Research 2003 Nov; 13(11):2498-504]

Publications citing Cytoscape

Publications that use Cytoscape help to keep it funded, so please cite our papers if you use Cytoscape.

Link to a Google Scholar search for articles citing Shannon et al. (2003): http://scholar.google.com/scholar?hl=en&lr=&cites=3669641697993554798 (256 hits as of May 29, 2007)

Link to a Pubmed Central search for (free full-text) articles citing Shannon et al. (2003): http://www.pubmedcentral.nih.gov/tocrender.fcgi?action=cited&artid=403769 (72 articles as of May 29, 2007)

Cytoscape Press

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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