== Publications about Cytoscape ==
'''Integration of biological networks and gene expression data using Cytoscape'''<<BR>>Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD<<BR>>[[http://www.nature.com/nprot/journal/v2/n10/abs/nprot.2007.324.html|Nat Protoc. 2007;2(10):2366-82]]<<BR>>[[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17947979|PubMed Abstract]]<<BR>>

'''Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks'''<<BR>>Rowan Christmas, Iliana Avila-Campillo, Hamid Bolouri, Benno Schwikowski, Mark Anderson, Ryan Kelley, Nerius Landys, Chris Workman, Trey Ideker, Ethan Cerami, Rob Sheridan, Gary D. Bader, and Chris Sander<<BR>>[[http://educationbook.aacrjournals.org/cgi/content/full/2005/1/12|Am Assoc Cancer Res Educ Book 2005: 12-16]]<<BR>>

'''Cytoscape: a software environment for integrated models of biomolecular interaction networks.''' <<BR>>
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. <<BR>>
[[http://www.genome.org/cgi/content/full/13/11/2498|Genome Research 2003 Nov; 13(11):2498-504]]

== Publications citing Cytoscape ==
Publications that use Cytoscape help to keep it funded, so please cite our papers if you use Cytoscape.

Link to a Google Scholar search for articles citing Shannon et al. (2003): http://scholar.google.com/scholar?hl=en&lr=&cites=3669641697993554798 (256 hits as of May 29, 2007)

Link to a Pubmed Central search for (free full-text) articles citing Shannon et al. (2003): http://www.pubmedcentral.nih.gov/tocrender.fcgi?action=cited&artid=403769 (72 articles as of May 29, 2007)

== Cytoscape Press ==
 * Nov.16.2007 [[http://www.laboratorytalk.com/news/cyo/cyo100.html|Open-source bioinformatics attracts much interest]] - Laboratory Talk
 * Nov.9.2007 [[http://www.separationsnow.com/coi/cda/detail.cda?id=17536&type=News&chId=6|Cytoscape open-source bioinformatics platform symposium highlights a mushrooming user community]] - separationsNOW
 * Mar.12.2007 [[http://members.forbes.com/forbes/2007/0312/072.html|Friendster for Proteins]] - Forbes Magazine