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'''Integration of biological networks and gene expression data using Cytoscape'''[[BR]]Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD[[BR]][http://www.nature.com/nprot/journal/v2/n10/abs/nprot.2007.324.html Nat Protoc. 2007;2(10):2366-82][[BR]][http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17947979 PubMed Abstract][[BR]] '''Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks'''[[BR]]Rowan Christmas, Iliana Avila-Campillo, Hamid Bolouri, Benno Schwikowski, Mark Anderson, Ryan Kelley, Nerius Landys, Chris Workman, Trey Ideker, Ethan Cerami, Rob Sheridan, Gary D. Bader, and Chris Sander[[BR]][http://educationbook.aacrjournals.org/cgi/content/full/2005/1/12 Am Assoc Cancer Res Educ Book 2005: 12-16][[BR]] '''Cytoscape: a software environment for integrated models of biomolecular interaction networks.''' [[BR]] |
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Cytoscape: a software environment for integrated models of biomolecular interaction networks. [[BR]] ''Genome Research'' 2003 Nov; 13(11):2498-504 . Free full text at http://www.genome.org/cgi/content/full/13/11/2498 |
[http://www.genome.org/cgi/content/full/13/11/2498 Genome Research 2003 Nov; 13(11):2498-504] |
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| Publications that use Cytoscape help to keep it funded. | Publications that use Cytoscape help to keep it funded, so please cite our papers if you use Cytoscape. |
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== Cytoscape Press == * Nov.16.2007 [http://www.laboratorytalk.com/news/cyo/cyo100.html Open-source bioinformatics attracts much interest] - Laboratory Talk * Nov.9.2007 [http://www.separationsnow.com/coi/cda/detail.cda?id=17536&type=News&chId=6 Cytoscape open-source bioinformatics platform symposium highlights a mushrooming user community] - separationsNOW * Mar.12.2007 [http://members.forbes.com/forbes/2007/0312/072.html Friendster for Proteins] - Forbes Magazine |
Publications about Cytoscape
Integration of biological networks and gene expression data using CytoscapeBRCline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GDBR[http://www.nature.com/nprot/journal/v2/n10/abs/nprot.2007.324.html Nat Protoc. 2007;2(10):2366-82]BR[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17947979 PubMed Abstract]BR
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction NetworksBRRowan Christmas, Iliana Avila-Campillo, Hamid Bolouri, Benno Schwikowski, Mark Anderson, Ryan Kelley, Nerius Landys, Chris Workman, Trey Ideker, Ethan Cerami, Rob Sheridan, Gary D. Bader, and Chris SanderBR[http://educationbook.aacrjournals.org/cgi/content/full/2005/1/12 Am Assoc Cancer Res Educ Book 2005: 12-16]BR
Cytoscape: a software environment for integrated models of biomolecular interaction networks. BR Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. BR [http://www.genome.org/cgi/content/full/13/11/2498 Genome Research 2003 Nov; 13(11):2498-504]
Publications citing Cytoscape
Publications that use Cytoscape help to keep it funded, so please cite our papers if you use Cytoscape.
Link to a Google Scholar search for articles citing Shannon et al. (2003): http://scholar.google.com/scholar?hl=en&lr=&cites=3669641697993554798 (256 hits as of May 29, 2007)
Link to a Pubmed Central search for (free full-text) articles citing Shannon et al. (2003): http://www.pubmedcentral.nih.gov/tocrender.fcgi?action=cited&artid=403769 (72 articles as of May 29, 2007)
Cytoscape Press
Nov.16.2007 [http://www.laboratorytalk.com/news/cyo/cyo100.html Open-source bioinformatics attracts much interest] - Laboratory Talk
Nov.9.2007 [http://www.separationsnow.com/coi/cda/detail.cda?id=17536&type=News&chId=6 Cytoscape open-source bioinformatics platform symposium highlights a mushrooming user community] - separationsNOW
Mar.12.2007 [http://members.forbes.com/forbes/2007/0312/072.html Friendster for Proteins] - Forbes Magazine