== Recent Presentation Slides ==
 * [[https://speakerdeck.com/cytoscape|Speaker Deck]]

== Cytoscape Online Tutorials ==

See our most up-to-date tutorials on [[http://opentutorials.cgl.ucsf.edu/index.php/Portal:Cytoscape|OpenTutorials]].

== Older Tutorials ==
To get you started with Cytoscape: [[GettingStarted|Getting Started Guide]]

The Cytoscape Online Tutorials from cytoscape.org have been moved here and updated for use with version 2.4.
 * [[/Basic|Basic Tutorials]]
  * Getting Started, Filters & Editor, Fetching External Data, Web Services Clients, Expression Analysis
 * [[/Advanced|Advanced Tutorials]]
  * Literature Searching, Gene Ontology Annotation, Modules and Complexes, and Web Services

A Cytoscape tutorial series of lectures, videos, and exercises can be found at
http://www.csc.fi/english/research/sciences/bioscience/Courses_and_events/cytoscape/index_html. Note that the videos require !RealPlayer to view.

== Presentations and Lecture Slides ==

Please feel free to use these lecture slides for your own presentations about Cytoscape.

 * Print this [[attachment:CytoscapeHandout.ppt|Cytoscape Handout]] for your lectures
 * [[attachment:CytoscapeAndR2_16_4_09.ppt]] A presentation on Cytoscape in general and a specific plugin R2 (by Piet Molenaar, partly based on slides by Tero Aittokallio)
 * [[InternationalConferenceOnSystemsBiologyDemos|2008 Systems Biology Conference Demos and Case Studies]]
 * [[attachment:CytoscapeISMB2005.ppt|ISMB 2005 Tutorial]]
 * [[attachment:CytoscapeBMES_Sep282005.ppt|BMES 2005 Tutorial]]
 * [[attachment:EBIPresentationMay2009.pdf|Data Integration with Cytoscape]] at EMBL-EBI Biological Networks: Reconstruction, Analysis, and Modelling (May 5 & 6 2009)
   * Use [[http://cbio.mskcc.org/mondrian|Mondrian]] Cytoscape Web Start as a demonstration
   * [[attachment:ebi-presentation-2009.tar.gz|LaTeX file, Makefile, included EPS files, and lecture notes as TeX comments]]
     * Requires [[http://latex-beamer.sourceforge.net/|beamer]] to be installed
     * EPS diagrams made with [[http://www.omnigroup.com/applications/omnigraffle|OmniGraffle]]
 * [[attachment:CytoscapeDevelopersTutorial.ppt|Cytoscape 2.x Developers Tutorial]]
 * [[attachment:ClustersAndGroups.ppt|Clusters and Groups Presentation]]
 * [[attachment:CytoscapeUsersTutorial.ppt|2010 Cytoscape Retreat User Tutorial]]
 * EmblHeidelbergCytoscapeCourseSept2010

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