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##The sections below may be useful when creating an RFC, delete the ones that are not Cytoscape plugins are mainly developed by third parties to add extra functionality to Cytoscape. Many plugin authors are willing to share the plugins they developed. Cytoscape maintains a long list of plugins at Cytoscape website at (http://cytoscape.org/plugins2.php) and the list is growing over time.

Right now, if a user wants to install a plugin, he/she can only do it manually.
(1) Look at the Cytoscape website or the plugin website he/she knows.
(2) Download the plugin,
(3) Install the plugin into the Cytoscape.
To manage the plugins (add/delete/update), user needs to keep track of each plugins manually and must know where the Cytoscape plugins are placed (in a designated directory).

The goal of this project is to provide a “Plugin manager” at Cytoscape to automate the the plugin installation process, so the users will have GUIs to manage their plugins (add/delete/update). The GUIs will integrate Cytoscape, plugin website, and installation process together and user even don’t need to know what the designated Cytoscape plugin directory is. We also note that “Firefox” and “Eclipse” already have such practice to add their add-ons.

This project should include three components:
(1) plugin database
(2) plugin web site
(3) plugin manager

RFC Name : ...

Editor(s): ...

TableOfContents([2])

About this document

This is an official Request for Comment (RFC) for Add your text here.

For details on RFCs in general, check out the [http://www.answers.com/main/ntquery?method=4&dsid=2222&dekey=Request+for+Comments&gwp=8&curtab=2222_1&linktext=Request%20for%20Comments Wikipedia Entry: Request for Comments (RFCs)]

Status

How to Comment

To view/add comments, click on any of 'Comment' links below. By adding your ideas to the Wiki directly, we can more easily organize everyone's ideas, and keep clear records. Be sure to include today's date and your name for each comment. Here is an example to get things started: ["/Comment"].

Try to keep your comments as concrete and constructive as possible. For example, if you find a part of the RFC makes no sense, please say so, but don't stop there. Take the extra step and propose alternatives.

Proposal

Cytoscape plugins are mainly developed by third parties to add extra functionality to Cytoscape. Many plugin authors are willing to share the plugins they developed. Cytoscape maintains a long list of plugins at Cytoscape website at (http://cytoscape.org/plugins2.php) and the list is growing over time.

Right now, if a user wants to install a plugin, he/she can only do it manually. (1) Look at the Cytoscape website or the plugin website he/she knows. (2) Download the plugin, (3) Install the plugin into the Cytoscape. To manage the plugins (add/delete/update), user needs to keep track of each plugins manually and must know where the Cytoscape plugins are placed (in a designated directory).

The goal of this project is to provide a “Plugin manager” at Cytoscape to automate the the plugin installation process, so the users will have GUIs to manage their plugins (add/delete/update). The GUIs will integrate Cytoscape, plugin website, and installation process together and user even don’t need to know what the designated Cytoscape plugin directory is. We also note that “Firefox” and “Eclipse” already have such practice to add their add-ons.

This project should include three components: (1) plugin database (2) plugin web site (3) plugin manager

Biological Questions / Use Cases

General Notes

Requirements

Deferred Items

Open Issues

Backward Compatibility

Expected growth and plan for growth

References

Implementation Plan

  • [:Pluginwebsite/Implementation Plan:/Implementation Plan]

Comments

PageComment2

Pluginwebsite (last edited 2009-02-12 01:03:45 by localhost)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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