Cytoscape WikiAttachment 'example1.xml'
Download 1 <?xml version="1.0" encoding="UTF-8"?>
2 <sbml xmlns="http://www.sbml.org/sbml/level2" level="2" version="1">
3 <model id="TestModel">
4 <annotation>
5 <listOfLayouts xmlns="http://projects.eml.org/bcb/sbml/level2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
6 <layout id="Layout_1">
7 <dimensions width="400" height="220"/>
8 <listOfCompartmentGlyphs>
9 <compartmentGlyph id="CompartmentGlyph_1" compartment="Compartment_1">
10 <boundingBox id="bb1">
11 <position x="5" y="5"/>
12 <dimensions width="390" height="210"/>
13 </boundingBox>
14 </compartmentGlyph>
15 </listOfCompartmentGlyphs>
16 <listOfSpeciesGlyphs>
17 <speciesGlyph id="SpeciesGlyph_1" species="Species_1">
18 <boundingBox id="bb2">
19 <position x="80" y="26"/>
20 <dimensions width="240" height="24"/>
21 </boundingBox>
22 </speciesGlyph>
23 <speciesGlyph id="SpeciesGlyph_2" species="Species_2">
24 <boundingBox id="bb3">
25 <position x="80" y="170"/>
26 <dimensions width="240" height="24"/>
27 </boundingBox>
28 </speciesGlyph>
29 </listOfSpeciesGlyphs>
30 <listOfReactionGlyphs>
31 <reactionGlyph id="ReactionGlyph_1" reaction="Reaction_1">
32 <curve>
33 <listOfCurveSegments>
34 <curveSegment xsi:type="LineSegment">
35 <start x="165" y="105"/>
36 <end x="165" y="115"/>
37 </curveSegment>
38 </listOfCurveSegments>
39 </curve>
40 <listOfSpeciesReferenceGlyphs>
41 <speciesReferenceGlyph id="SpeciesReferenceGlyph_1" speciesReference="SpeciesReference_1" speciesGlyph="SpeciesGlyph_1" role="substrate">
42 <curve>
43 <listOfCurveSegments>
44 <curveSegment xsi:type="CubicBezier">
45 <start x="165" y="105"/>
46 <end x="195" y="60"/>
47 <basePoint1 x="165" y="90"/>
48 <basePoint2 x="165" y="90"/>
49 </curveSegment>
50 </listOfCurveSegments>
51 </curve>
52 </speciesReferenceGlyph>
53 <speciesReferenceGlyph id="SpeciesReferenceGlyph_2" speciesReference="SpeciesReference_2" speciesGlyph="SpeciesGlyph_2" role="product">
54 <curve>
55 <listOfCurveSegments>
56 <curveSegment xsi:type="CubicBezier">
57 <start x="165" y="115"/>
58 <end x="195" y="160"/>
59 <basePoint1 x="165" y="130"/>
60 <basePoint2 x="165" y="130"/>
61 </curveSegment>
62 </listOfCurveSegments>
63 </curve>
64 </speciesReferenceGlyph>
65 </listOfSpeciesReferenceGlyphs>
66 </reactionGlyph>
67 <reactionGlyph id="ReactionGlyph_1" reaction="Reaction_2">
68 <curve>
69 <listOfCurveSegments>
70 <curveSegment xsi:type="LineSegment">
71 <start x="235" y="105"/>
72 <end x="235" y="115"/>
73 </curveSegment>
74 </listOfCurveSegments>
75 </curve>
76 <listOfSpeciesReferenceGlyphs>
77 <speciesReferenceGlyph id="SpeciesReferenceGlyph_3" speciesReference="SpeciesReference_3" speciesGlyph="SpeciesGlyph_2" role="substrate">
78 <curve>
79 <listOfCurveSegments>
80 <curveSegment xsi:type="CubicBezier">
81 <start x="235" y="115"/>
82 <end x="205" y="160"/>
83 <basePoint1 x="235" y="130"/>
84 <basePoint2 x="235" y="130"/>
85 </curveSegment>
86 </listOfCurveSegments>
87 </curve>
88 </speciesReferenceGlyph>
89 <speciesReferenceGlyph id="SpeciesReferenceGlyph_4" speciesReference="SpeciesReference_4" speciesGlyph="SpeciesGlyph_1" role="product">
90 <curve>
91 <listOfCurveSegments>
92 <curveSegment xsi:type="CubicBezier">
93 <start x="235" y="105"/>
94 <end x="205" y="60"/>
95 <basePoint1 x="235" y="90"/>
96 <basePoint2 x="235" y="90"/>
97 </curveSegment>
98 </listOfCurveSegments>
99 </curve>
100 </speciesReferenceGlyph>
101 </listOfSpeciesReferenceGlyphs>
102 </reactionGlyph>
103 </listOfReactionGlyphs>
104 <listOfTextGlyphs>
105 <textGlyph id="TextGlyph_01" graphicalObject="SpeciesGlyph_1" originOfText="SpeciesGlyph_1">
106 <boundingBox id="bbA">
107 <position x="92" y="26"/>
108 <dimensions width="228" height="24"/>
109 </boundingBox>
110 </textGlyph>
111 <textGlyph id="TextGlyph_02" graphicalObject="SpeciesGlyph_2" originOfText="SpeciesGlyph_2">
112 <boundingBox id="bbB">
113 <position x="92" y="170"/>
114 <dimensions width="228" height="24"/>
115 </boundingBox>
116 </textGlyph>
117 </listOfTextGlyphs>
118 </layout>
119 </listOfLayouts>
120 </annotation>
121 <listOfCompartments>
122 <compartment id="Compartment_1" size="1"/>
123 </listOfCompartments>
124 <listOfSpecies>
125 <species id="Species_1" compartment="Compartment_1" initialConcentration="0"/>
126 <species id="Species_2" compartment="Compartment_1" initialConcentration="0"/>
127 </listOfSpecies>
128 <listOfReactions>
129 <reaction id="Reaction_1" reversible="false">
130 <listOfReactants>
131 <speciesReference species="Species_1">
132 <annotation>
133 <layoutId xmlns="http://projects.eml.org/bcb/sbml/level2" id="SpeciesReference_1"/>
134 </annotation>
135 </speciesReference>
136 </listOfReactants>
137 <listOfProducts>
138 <speciesReference species="Species_2">
139 <annotation>
140 <layoutId xmlns="http://projects.eml.org/bcb/sbml/level2" id="SpeciesReference_2"/>
141 </annotation>
142 </speciesReference>
143 </listOfProducts>
144 </reaction>
145 <reaction id="Reaction_2" reversible="false">
146 <listOfReactants>
147 <speciesReference species="Species_2">
148 <annotation>
149 <layoutId xmlns="http://projects.eml.org/bcb/sbml/level2" id="SpeciesReference_3"/>
150 </annotation>
151 </speciesReference>
152 </listOfReactants>
153 <listOfProducts>
154 <speciesReference species="Species_1">
155 <annotation>
156 <layoutId xmlns="http://projects.eml.org/bcb/sbml/level2" id="SpeciesReference_4"/>
157 </annotation>
158 </speciesReference>
159 </listOfProducts>
160 </reaction>
161 </listOfReactions>
162 </model>
163 </sbml>
164
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