Cytoscape Wiki|
← Revision 6 as of 2006-04-04 12:45:19
Size: 1078
Comment:
|
← Revision 7 as of 2006-07-07 14:11:25 →
Size: 1180
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 12: | Line 12: |
| * [http://sbi.imim.es/piana/ PIANA] in Python. | * [http://sbi.imim.es/piana/ PIANA] in Python. Freely available (open-source). Outputs results in Cytoscape 'importable' format (ie. sif, noa, eda). |
Software applications
[http://www.cytoscape.org Cytoscape] in Java. Freely available (open-source)
[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16417636&query_hl=2&itool=pubmed_docsum GenoLink]. Free executable for academic use.
Programming Libraries
[http://www.cytoscape.org Cytoscape] in Java. Freely available (open-source)
[https://networkx.lanl.gov/ NetworkX] in Python
[http://sbi.imim.es/piana/ PIANA] in Python. Freely available (open-source). Outputs results in Cytoscape 'importable' format (ie. sif, noa, eda).
[http://www.bioconductor.org/packages/bioc/stable/src/contrib/html/graph.html Bioconductor graph package] in R. Freely available (open-source)
Other link directories