Differences between revisions 6 and 10 (spanning 4 versions)

Software applications

[http://www.cytoscape.org Cytoscape] in Java. Freely available (open-source)
[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16417636&query_hl=2&itool=pubmed_docsum GenoLink]. Free executable for academic use.
[http://ondex.sourceforge.net ONDEX]. Open source.
[http://nwb.slis.indiana.edu/ Network Workbench: A Large-Scale Network Analysis, Modeling and Visualization Toolkit for Biomedical, Social Science and Physics Research]

Programming Libraries

[http://www.cytoscape.org Cytoscape] in Java. Freely available (open-source)
[https://networkx.lanl.gov/ NetworkX] in Python
[http://sbi.imim.es/piana/ PIANA] in Python. Freely available (open-source). Outputs results in Cytoscape 'importable' format (ie. sif, noa, eda).
[http://www.bioconductor.org/packages/bioc/stable/src/contrib/html/graph.html Bioconductor graph package] in R. Freely available (open-source)

-  ← Revision 6 as of 2006-04-04 12:45:19 →
  Size: 1078
  Editor: BennoSchwikowski
  Comment:
+  ← Revision 10 as of 2007-05-24 16:15:41 →
  Size: 1434
  Editor: GaryBader
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 8:
+ * [http://ondex.sourceforge.net ONDEX]. Open source.

 * [http://nwb.slis.indiana.edu/ Network Workbench: A Large-Scale Network Analysis, Modeling and Visualization Toolkit for Biomedical, Social Science and Physics Research]
-Line 12:
+Line 14:
- * [http://sbi.imim.es/piana/ PIANA] in Python.
+ * [http://sbi.imim.es/piana/ PIANA] in Python. Freely available (open-source). Outputs results in Cytoscape 'importable' format (ie. sif, noa, eda).
-Line 23:
+Line 25:
+ * http://www.aisee.com/