<> = Personal Info = My name is Márcio Rosa da Silva and you can contact me at: mmrsva (a) gmail com I am a PhD student at the [[http://www.gbf.de/SystemsBiology|Systems Biology group]] of the [[http://www.gbf.de|German Research Center for Biotechnology]] in [[http://www.braunschweig.de|Braunschweig]], Germany. I work at [[http://www.unisinos.br|UNISINOS]] (Universidade do Vale do Rio dos Sinos), a university in south of Brazil as an assistant professor. = Cytoscape work = == Plugins == I developed some plugins for Cytoscape. They can be downloaded from here: * http://csresources.sourceforge.net/ == Other tools == Are you a former user of Pajek that use Cytoscape now? Need to convert Pajek files to Cytoscape (including conversion of Pajek cluster files to Cytoscape node attributes)? See: [[http://pynetconv.sourceforge.net|pyNetConv]] == Documents == I have worked with many languages before, but Java is something new to me. I decided to learn it because I wanted to write plugins for Cytoscape. So I have run into some problems in the beginning, like: "how to start?" :-) So I decided to write some documents about this experience. I'll put this documents here at the wiki and in the '''csresources''' page. Up to now, I wrote only one. It can be found here: * SettingUpEclipseForPluginDevelopment === Drafts === * Cytoscape programming tips: CodeTips * Changing default behavior of MetaNodes plugin to show only one edge between metanodes: MetaNodesOneEdgeHack * Discussion about changing node views: ChangingNodeView * Is it possible to LoadAttributesFilesInsideJar? * How to make PluginsWithJython? * [[How_to_use_external_libs_in_a_Cytoscape_plugin]] = Wiki Tips = * If you want to find all pages linking to a page in the wiki, click on the title of the page. It will return a ''full text search'' of the title.