International Conference on Systems Biology Demos

Description

This is an internal wiki page for collecting abstracts, data, posters, and other materials for the arena demos on Cytoscape at the International Conference on Systems Biology.

Facts on the conference and demos

Started 2000 by Kitano, now organized by ISSB
Lots of big names in bioinformatics
Cytoscape will have an arena (booth) in the conference exhibition/poster area
web site: http://www.icsb-2008.org
Arena hours: Three days: Sun Aug 24th – Tue 26th
- Aug 24 1300-1600 and 1800-2000
- Aug 25 1300-1500
- Aug 26 1300-1600 and 1800-200
- 5-10 workflows using plugins

Abstracts

Setup for abstracts

Short abstract
Analysis keywords
Cytoscape keywords
Sample and info on wiki page…

List of Abstracts

Map of Plugins to Scenarios

Use Case	Biological Example	Plugins	Remarks
Display molecular data in biological context	Overlay Gene Expression Data on Network	SimpleGeneExpressionNatureProtocols
Predict molecular interactions	??	MiMiPlugin	talk with David States about this
	AtheroSclerosisDemo	Agilent Literature Search
Find active regions	Statistics to infer gene targets for wetlab testing		R2AndCytoscape, McodePlugin, BiNGO?
	Find possible complexes, protein families, functional relationships	McodePlugin, CyOogGraphLayout, CommunityStructureGraphLayout, ClusterMakerAndEpistaticMapping
	Multi-level Network Analysis	DomainGraphAndSpliceVariation, NetAnalyzer
Structure and Function'		StructureVizChimera
Pathway Curation, Storing and Exporting Images		WikiPathways

Data

put data files here

Posters

put posters here

Presentation Guides

for each presentation, plut some powerpoint slide that describes it plus a set of scripted steps

InternationalConferenceOnSystemsBiologyDemos