International Conference on Systems Biology Demos

Description

This is an internal wiki page for collecting abstracts, data, posters, and other materials for the arena demos on Cytoscape at the International Conference on Systems Biology.

Facts on the conference and demos

Started 2000 by Kitano, now organized by ISSB
Lots of big names in bioinformatics
Cytoscape will have an arena (booth) in the conference exhibition/poster area
web site: http://www.icsb-2008.org
Arena hours: Three days: Sun Aug 24th – Tue 26th
- Aug 24 1300-1600 and 1800-2000
- Aug 25 1300-1500
- Aug 26 1300-1600 and 1800-200
- 5-10 workflows using plugins

Abstracts

Setup for abstracts

Short abstract
Analysis keywords
Cytoscape keywords
Sample and info on wiki page…

List of Abstracts

Map of Plugins to Scenarios

Type of Problem	Biological Use Case	Data Types	Plugins	Remarks
Overlay Gene Expression	Human (Rual)	Expression Data, Imported PPI networks		vizmapper, filters, layout
Augment Measurement Data with Network Inference	AtheroSclerosisDemo	Expression Data, literature-inferred PPI networks	Agilent Literature Search, Vista Clara Plugin
	MiMiPlugin	fill in here	MiMiPlugin	talk with David States about this
Statistics to infer gene targets for wetlab testing	R2AndCytoscape	Expression Data, Transcription factor data	R2Plugin, McodePlugin
Identify interesting aggregations of genes and/or proteins	Find possible complexes, protein families, functional relationships	???	McodePlugin, CyOogGraphLayout, CommunityStructureGraphLayout
Structure and Function		???	StructureVizChimera

Data

put data files here

Posters

put posters here

Presentation Guides

for each presentation, plut some powerpoint slide that describes it plus a set of scripted steps

InternationalConferenceOnSystemsBiologyDemos