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7. Select '''EnterzGene''' as '''Primary Key'''. 8. Right-click on '''EntrezGene''' column name and set the type to ''String''. 9. Do the same for '''HGNC'''. 10. Right-click on '''Other Aliases''' and select ''List'' as the data type. 11. Check '''Other Aliases''' as Alias (under "Alias?" checkboxes). 12. Now the Table Import dialog is looks like the following: attachment:importdialog1.png 13. Press ''Import''. |
How to Use Gene Name Mapping Files
This is a quick tutorial to learn how to use Gene Name Mapping files.
Import Network and Name Mapping Files
Download name mapping files. Mapping files are available at [http://chianti.ucsd.edu/kono/genenamemapping.html this page]. In this tutorial, we are going to use dictionary_no_prefix.zip, which is a file set without prefixes for each gene names. Unzip the archive.
Load sample network file. Open network import dialog from File-->Import-->Network (multiple file types)... Then click URL radio button and import Human Protein-Protein: Rual et al. (Subnetwork for tutorial).
Open attribute table import dialog from File-->Import-->Attribute from Table.
Select human.dic_cyto.txt as the input file.
Check "Show Text File Import Options and click Transfer first line as attribute names checkbox.
Uncheck "Show Text File Import Options and check Mapping Options.
Select EnterzGene as Primary Key.
Right-click on EntrezGene column name and set the type to String.
Do the same for HGNC.
Right-click on Other Aliases and select List as the data type.
Check Other Aliases as Alias (under "Alias?" checkboxes).
- Now the Table Import dialog is looks like the following: attachment:importdialog1.png
Press Import.