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This RFC is the result of Allan Kuchinsky's initial exploration / evaluation of the InfoVis_Toolkit. As part of his evaluation, Allan built several prototypes, including one which demonstrates the excentric label features provided by InfoVis. There is a movie of the prototype available at: http://cytoscape.org/cgi-bin/moin.cgi/InfoVis_Toolkit?action=AttachFile&do=get&target=test_excentric.avi This RFC is the result of Allan Kuchinsky's initial exploration / evaluation of the ["InfoVis_Toolkit"]. As part of his evaluation, Allan built several prototypes, including one which demonstrates the excentric label features provided by InfoVis. There is a movie of the prototype available on the ["InfoVis_Toolkit"] page.

RFC Name : Excentric Labeling in Cytoscape

Editor(s): Allan Kuchinsky, Ethan Cerami

Status: Open to comment

TableOfContents([2])

Proposal

This is an RFC to create a core Cytoscape plugin that will support "Excentric Labeling".

First off, what exactly is "Excentric Labeling"?

  • "Excentric labeling is a dynamic technique of neighborhood labeling for data visualization. When the cursor stays more than one second over an area where objects are available, all labels in the neighborhood of the cursor are shown without overlap, and aligned to facilitate rapid reading. A circle centered on the position of the cursor defines the neighborhood or focus region. A line connects each label to the corresponding object."[1]

Here is an example, taken from [1]:

attachment:excentric1.png

Background

This RFC is the result of Allan Kuchinsky's initial exploration / evaluation of the ["InfoVis_Toolkit"]. As part of his evaluation, Allan built several prototypes, including one which demonstrates the excentric label features provided by InfoVis. There is a movie of the prototype available on the ["InfoVis_Toolkit"] page.

Biological Questions / Use Cases

Requirements

Deferred Items

Open Issues

References

[1] Jean-Daniel Fekete and Catherine Plaisant, Excentric Labeling: Dynamic Neighborhood Labeling for Data Visualization, HCIL Technical Report 99-09 (December 1998); http://www.cs.umd.edu/hcil CHI’99 Pittsburgh, PA, USA, May 15-20, 1999, 512-519.

Implementation Plan

Comments

How to Comment

Edit the page and add your comments under the provided header. By adding your ideas to the Wiki directly, we can more easily organize everyone's ideas, and keep clear records. Be sure to include today's date and your name for each comment. Try to keep your comments as concrete and constructive as possible. For example, if you find a part of the RFC makes no sense, please say so, but don't stop there. Take the extra step and propose alternatives.

ExcentricLabelRFC (last edited 2009-02-12 01:04:13 by localhost)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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