Cytoscape Wiki|
Size: 1338
Comment:
|
Size: 1366
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 4: | Line 4: |
| '' ''''1 Department of Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Campus E1.4, 66123 Saarbrücken, Germany '''' '' | '' 1 Department of Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Campus E1.4, 66123 Saarbrücken, Germany '' |
| Line 6: | Line 6: |
|
. ''''''2 Department of Molecular Cell and Developmental Biology, University of California, Santa Cruz, CA 95064, USA'''''' ''''' __Biological Use Case__''': Visualize the domain interactions that actually form a protein interaction network. Integrate exon expression data to visualize occurrences of alternative splicing events and the impact on the interactions. ''' |
''2 Department of Molecular Cell and Developmental Biology, University of California, Santa Cruz, CA 95064, USA''' ''''' |
| Line 9: | Line 8: |
| __Recipe__''' ''' | __Biological Use Case__: Visualize the domain interactions that actually form a protein interaction network. Integrate exon expression data to visualize occurrences of alternative splicing events and the impact on the interactions. ''' ''' |
| Line 11: | Line 10: |
| '''__Cytoscape version__'': 2.5, 2.6 ''''' | '''__Recipe__''' ''' ''' |
| Line 13: | Line 12: |
| '''__Plugins to Load__'': DomainGraph (http://domaingraph.bioinf.mpi-inf.mpg.de) ''''' | __Cytoscape version__: 2.5, 2.6 ''''' ''''' |
| Line 15: | Line 14: |
| '''__GUI steps__'': ''''' | ''__Plugins to Load__'': DomainGraph (http://domaingraph.bioinf.mpi-inf.mpg.de) ''''' ''''' |
| Line 17: | Line 16: |
|
'''''Describe each step (story), the GUI action to take, and probable remarks ''''' || Story'' '' || Action'' '' || Remarks'' '' || |
''__GUI steps__'': ''''' ''''' Describe each step (story), the GUI action to take, and probable remarks ''''' ''''' || Story '' '' || Action '' '' || Remarks '' '' || |
| Line 22: | Line 23: |
| __Data / Session Files__''': Attach (preferably) a session file or else the data files used in the workflow ''' | __Data / Session Files__: Attach (preferably) a session file or else the data files used in the workflow ''' ''' |
| Line 24: | Line 25: |
| __Presentation__''': Attach your presentation ''' | '''__Presentation__''': Attach your presentation ''' ''' |
| Line 26: | Line 27: |
| __Webstart__''': Attach a webstart ''' | '''__Webstart__''': Attach a webstart ''' ''' |
| Line 28: | Line 29: |
| __Video__''': Attach a video link ''' | '''__Video__''': Attach a video link ''' ''' |
DomainGraph: Visual Analysis of the Effects of Alternative Splicing on Protein and Domain Interaction Networks
Dorothea Emig1, Melissa S. Cline2, Thomas Lengauer1, and Mario Albrecht1
1 Department of Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Campus E1.4, 66123 Saarbrücken, Germany
2 Department of Molecular Cell and Developmental Biology, University of California, Santa Cruz, CA 95064, USA
Biological Use Case: Visualize the domain interactions that actually form a protein interaction network. Integrate exon expression data to visualize occurrences of alternative splicing events and the impact on the interactions.
Recipe
Cytoscape version: 2.5, 2.6
Plugins to Load: DomainGraph (http://domaingraph.bioinf.mpi-inf.mpg.de)
GUI steps:
Describe each step (story), the GUI action to take, and probable remarks
Story |
Action |
Remarks |
|
|
|
Data / Session Files: Attach (preferably) a session file or else the data files used in the workflow
Presentation: Attach your presentation
Webstart: Attach a webstart
Video: Attach a video link