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← Revision 2 as of 2008-08-16 11:42:52
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| '' ''''1 Department of Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Campus E1.4, 66123 Saarbrücken, Germany '''' '' |
'' 1 Department of Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Campus E1.4, 66123 Saarbrücken, Germany '' ''2 Department of Molecular Cell and Developmental Biology, University of California, Santa Cruz, CA 95064, USA''' ''''' |
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. ''''''2 Department of Molecular Cell and Developmental Biology, University of California, Santa Cruz, CA 95064, USA'''''' ''''' __Biological Use Case__''': Visualize the domain interactions that actually form a protein interaction network. Integrate exon expression data to visualize occurrences of alternative splicing events and the impact on the interactions. ''' |
__Biological Use Case__: Visualize the domain interactions that actually form a protein interaction network. Integrate exon expression data to visualize occurrences of alternative splicing events and the impact on the interactions. ''' ''' |
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| __Recipe__''' ''' | '''__Recipe__''' ''' ''' |
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| '''__Cytoscape version__'': 2.5, 2.6 ''''' | __Cytoscape version__: 2.5, 2.6 ''''' ''''' |
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| '''__Plugins to Load__'': DomainGraph (http://domaingraph.bioinf.mpi-inf.mpg.de) ''''' | ''__Plugins to Load__'': DomainGraph (http://domaingraph.bioinf.mpi-inf.mpg.de) ''''' ''''' |
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| '''__GUI steps__'': ''''' | ''__GUI steps__'': ''''' ''''' |
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'''''Describe each step (story), the GUI action to take, and probable remarks ''''' || Story'' '' || Action'' '' || Remarks'' '' || |
Describe each step (story), the GUI action to take, and probable remarks ''''' ''''' || Story '' '' || Action '' '' || Remarks '' '' || |
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| __Data / Session Files__''': Attach (preferably) a session file or else the data files used in the workflow ''' | __Data / Session Files__: Attach (preferably) a session file or else the data files used in the workflow ''' ''' |
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| __Presentation__''': Attach your presentation ''' | '''__Presentation__''': Attach your presentation ''' ''' |
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| __Webstart__''': Attach a webstart ''' | '''__Webstart__''': Attach a webstart ''' ''' |
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| __Video__''': Attach a video link ''' | '''__Video__''': Attach a video link ''' ''' |
DomainGraph: Visual Analysis of the Effects of Alternative Splicing on Protein and Domain Interaction Networks
Dorothea Emig1, Melissa S. Cline2, Thomas Lengauer1, and Mario Albrecht1
1 Department of Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Campus E1.4, 66123 Saarbrücken, Germany
2 Department of Molecular Cell and Developmental Biology, University of California, Santa Cruz, CA 95064, USA
Biological Use Case: Visualize the domain interactions that actually form a protein interaction network. Integrate exon expression data to visualize occurrences of alternative splicing events and the impact on the interactions.
Recipe
Cytoscape version: 2.5, 2.6
Plugins to Load: DomainGraph (http://domaingraph.bioinf.mpi-inf.mpg.de)
GUI steps:
Describe each step (story), the GUI action to take, and probable remarks
Story |
Action |
Remarks |
|
|
|
Data / Session Files: Attach (preferably) a session file or else the data files used in the workflow
Presentation: Attach your presentation
Webstart: Attach a webstart
Video: Attach a video link