RFC Name : Cytoscape Book

Editor(s): Allan Kuchinsky

Date: 2008-05-02

Status: !Under Construction

TableOfContents([2])

Proposal

Provide a brief description of the purpose and goals of project.

Background

Describe why this project is being proposed and what issues are addressed.

Use Cases

Provide examples of how the products of this project will be used.

Implementation Plan

Outline and describe the process and major issues related to implementing this proposal. Illustrate your plan when possible. Try this free online tool for making diagrams -> [http://www.best4c.com/editor/NetMapApplication.jsp Best4c] (draw; save; then insert hyperlink into this page)

Title

Lead

Description

Status

Cytoscape Themes.

Sarah and Alex

We think it would be useful to provide customized versions of Cytoscape for specific users. An example would be a biologist themed release that would include all plugins to support import/export of biological file formats.

Ready for testing

Filter UI redesign.

Peng

To construct complex filter with the combination of AND, OR, and NOT.

Ready for testing

Project Management

Project Timeline

Provide a timeline for implementation. Insert a graphic if you can. Try this free online tool for making project timelines -> [http://www.helpuplan.com/index.asp Help-u-Plan] (create a new chart; modify; right-click to save gif; then attach to this page)

Tasks and Milestones

Outline the major milestones and tasks involved in implementation.

  1. Milestone 1: …

    1. Task 1: ...
    2. Task 2: ...
  2. Milestone 2: …

Project Dependencies

Outline and projects that depend on this project, link to relevant RFC's and note at what point dependent projects could be started.

Link to other related RFCs

Issues

List any issues, conflict, or dependencies raised by this proposal

Comments

How to Comment

Edit the page and add your comments under the provided header. By adding your ideas to the Wiki directly, we can more easily organize everyone's ideas, and keep clear records. Be sure to include today's date and your name for each comment. Try to keep your comments as concrete and constructive as possible. For example, if you find a part of the RFC makes no sense, please say so, but don't stop there. Take the extra step and propose alternatives.

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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