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When you finish your data analysis and its visualization, you need to publish your data to share the results. Cytoscape has several options to do it.
As Session File
The easiest way to share your results with others is simply send the session file. You can save everything in one zipped archive file by clicking Save Session icon.
As Images
Cytoscape can generate publication-quality images from the network views. By selecting File → Export → Network View as Graphics... you can export the current network view into the following files:
- JPG
- PNG
- PS (Post Script)
- SVG
We recommend to to use PDF for publications because it is the standard vector graphics format and is easy to edit in other applications such as Adobe Illustrator.
Known Issues
For PDF export, there is an option to Export Texts as Fonts. This option does not work for two-byte characters such as Chinese or Japanese letters. To avoid corrupted texts in your publication, please uncheck this option when you publish networks including those non-English characters.
As Interactive Web Applications (New in 3.2.0)
Simple Network View
Full Web Application
Customize Export Template (For Advanced Users)
HTML5 template code is stored in **~/CytoscapeConfiguration/web** directory and it is user customizable.