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Cytoscape @version@ is the latest version of Cytoscape, which introduces a whole new architecture, developer API and set of user controls when compared with the 2.X series. Cytoscape @version@ represents a major redesign from the ground up, toward the goal of providing a stable, extensible, high-performance platform for network visualization and analysis. That being said; if you're familiar with former versions of Cytoscape, this version will feel completely familiar and you'll be set to go directly Cytoscape @version@ is the latest version of Cytoscape, building upon the new architecture, developer API and set of user controls established in the 3.x series. If you're familiar with former versions of Cytoscape, this version will feel completely familiar and you'll be all set to go. In future releases, we will continue to tweak and improve both the software and the documentation. This manual will be updated to reflect all the latest changes.
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This release introduces users to new interfaces and features:

 * New welcome screen and toolbar for quick access to common actions
 * New Data Table controls to interface with your data
 * Integrated support for graphical annotations in networks
 * Support for independent sets of networks within a single session
 * Advanced network and table import controls
 * Improved architecture and API for a more stable experience

In future releases, we will continue to tweak and improve both the software and the documentation. This manual will be updated to reflect all the latest changes.

Cytoscape @version@ is the latest version of Cytoscape, building upon the new architecture, developer API and set of user controls established in the 3.x series. If you're familiar with former versions of Cytoscape, this version will feel completely familiar and you'll be all set to go. In future releases, we will continue to tweak and improve both the software and the documentation. This manual will be updated to reflect all the latest changes.

This manual describes the installation and use of Cytoscape. For a more thorough understanding of Cytoscape and its ecosystem, we highly recommend reading the Welcome Letter accessible on the http://cytoscape.org website.

Cytoscape_3/UserManual/Introduction (last edited 2016-04-26 21:21:15 by bdemchak)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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