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''This manual describes the installation and use of Cytoscape. For a high level understanding of Cytoscape and its ecosystem, we highly recommend reading the '''Welcome Letter''' accessible on the Cytoscape web site.'' |
Cytoscape @version@ is the latest version of Cytoscape, which introduces a whole new architecture, developer API and set of user controls. Cytoscape 3.0 represents a major redesign from the ground up, toward the goal of providing a stable, extensible, high-performance platform for network visualization and analysis.
This manual describes the installation and use of Cytoscape. For a high level understanding of Cytoscape and its ecosystem, we highly recommend reading the Welcome Letter accessible on the Cytoscape web site.
If you're new to Cytoscape (or would simply like to quickly get started using v3.0), skip to the Launching Cytoscape and Getting Started sections below.
This release introduces users to new interfaces and features:
- New welcome screen and toolbar for quick access to common actions
- New Data Table controls to interface with your data
- Integrated support for graphical annotations in networks
- Support for independent sets of networks within a single session
- Advanced network and table import controls
- Improved architecture and API for a more stable experience
In future releases, we will continue to tweak and improve both the software and the documentation. This manual will be updated to reflect all the latest changes.