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Cytoscape @version@ is the latest version of Cytoscape, which introduces a whole new architecture, developer API and set of user controls. Cytoscape 3.0 represents a major redesign from the ground up, toward the goal of provide a stable, extensible, high-performance platform for network visualization and analysis. The initial Beta Release will introduce users to the new interfaces and features we've been working on: * New welcome screen and toolbar for quick access to common actions * New Data Table controls to interface with your data * Integrated support for graphical annotations in networks * Support for independent sets of networks within a single session * Advanced network and table import controls * Improved architecture and API for a more stable experience As we roll out the initial Beta Release leading up to the first official release, we will be continuing to tweak and improve both the software and the documentation. Bear with us as the manual below is updated to reflect all the latest changes. |
#DEPRECATED <<Include(Cytoscape_3/UserManual/Deprecated)>> |
This is a legacy document
This page has been deprecated and is no longer updated. The current version of the Cytoscape manual can be found at http://manual.cytoscape.org/
This manual describes the installation and use of Cytoscape. For a more thorough understanding of Cytoscape and its ecosystem, we highly recommend reading the Welcome Letter accessible on the http://cytoscape.org website.