== Node Attribute Table Browser Test Cases ==
||<style="text-align: center;" |2>'''Preconditions''' ||<style="text-align: center;" |2>'''Test Case ID''' ||<style="text-align: center;" |2>'''Instructions''' ||<style="text-align: center;" |2>'''Expected Results''' ||
||'''Date Executed''' ||'''Pass/Fail''' ||
||<|19> 1. Start Cytoscape <<BR>>2. Import a network file (eg galFiltered.sif) and attributes from text (eg. galGeneNames.csv) <<BR>>3. Select the Node Attribute Browser tab ||B2.1.1 ||1. Click Select Attributes <<BR>>2. Check the appropriate attribute boxes eg. cannonicalName ||A new column for the attribute should appear in the panel || ||  ||
||B2.1.2 ||Select a node and then select another node while in the Node Attribute Browser ||Attributes should change to those for each specific node || || ||
||B2.1.3 ||Drag and select multiple nodes ||Nodes should be highlighted and their attributes listed || || ||
||B2.1.4 ||Click one of the attributes of a node with multiple nodes selected ||The selected attribute should get highlighted and the node a new highlight colour || ||  ||
||B2.1.5 ||1. Select a node <<BR>>2. Double click on the text under one of the attribute columns <<BR>>3. Edit the text of eg. Species by changing the capitalisation the press enter ||The Browser should reflect the text changes and they should persist even if the node is unselected and then reselected || || ||
||B2.1.6 ||1. Drag and select several nodes (say 5) <<BR>>2. Click create a new (string) attribute and call it Names <<BR>>3. Click on the Attribute batch editor and select the Copy tab, select species from the Copy From menu and Names from the To menu <<BR>>4. Click GO ||The contents of the Copy From cells should now appear in the new attribute column Names || || ||
||B2.1.7 ||1. Select the Clear tab from the Attribute batch editor box <<BR>>2. Choose Names as the attribute column <<BR>>3. Click GO ||The Browser should reflect the changes by showing no entries in the Names column || || ||
||B2.1.8 ||1. Select the Operation tab from the Node Attribute Batch Editor <<BR>>2. Choose Set from the operation menu and choose the Names attribute as the column to edit <<BR>>3. Type “Galactose Metabolism” into the text field and click GO ||The Names attribute column should contain “Galactose Metabolism” for all the selected nodes || || ||
||B2.1.9 ||1. Repeat step 1 from B2.1.8 <<BR>>2. Choose Replace from the operation menu and choose the Names attribute as the column to edit <<BR>>3. Type “Galactose Transport” into the text field and click GO ||The Names attribute column should contain “Galactose Transport” for all the selected nodes || || ||
||B2.1.10 ||1. Repeat step 1 from B2.1.8 <<BR>>2. Choose To upper-case from the operation menu and choose the Names attribute as the column to edit <<BR>>3. Click GO ||The Names attribute column should contain “GALACTOSE TRANSPORT” or the text in the column should be all capitals || || ||
||B2.1.11 ||1. Repeat step 1 from B2.1.8 <<BR>>2. Choose To lower-case from the operation menu and choose the Names attribute as the column to edit||The Names attribute column should contain “galactose transport” or the text in the column should all be lower case || || ||
||B2.1.12 ||1. Repeat step 1 from B2.1.8 <<BR>>2. Choose Add Prefix from the operation menu and choose the Names attribute as the column to edit <<BR>>3. Type “Yeast-“ into the text field and click GO||The Names attribute column should contain “Yeast-galactose transport” or the text in the column should be preceded by “Yeast-“ || || ||
||B2.1.13 ||1. Repeat step 1 from B2.1.8 <<BR>>2. Choose Add Suffix from the operation menu and choose the Names attribute as the column to edit <<BR>>3. Type “-intracellular” into the text field and click GO ||The Names attribute column should contain “Yeast-galactose transport-intracellular” or the text in the column should be followed by “-intracellular” || || ||
||B2.1.14 ||1. Click create a new (Integer) attribute and call it Numbers <<BR>>2. Repeat step 1 from B2.1.8 <<BR>>3. Choose Set from the operation menu and choose the Numbers attribute as the column to edit <<BR>>4. Type “2” into the text field and click GO ||The Numbers attribute column should contain “2” || || ||
||B2.1.15 ||1. Repeat step 1 from B2.1.8 <<BR>>2. Choose Add Number from the operation menu and choose the Numbers attribute as the column to edit <<BR>>3. Type “2” into the text field and click GO ||The Numbers attribute column should contain “4” || || ||
||B2.1.16 ||1. Repeat step 1 from B2.1.8 <<BR>>2. Choose Mul from the operation menu and choose the Numbers attribute as the column to edit <<BR>>3. Type “2” into the text field and click GO ||The Numbers attribute column should contain “8” || || ||
||B2.1.17 ||1. Repeat step 1 from B2.1.8 <<BR>>2. Choose Div from the operation menu and choose the Numbers attribute as the column to edit <<BR>>3. Type “4” into the text field and click GO ||The Numbers attribute column should contain “2" || || ||
||B2.1.18 ||1. Click the Import attributes from file icon in the Browser <<BR>>2. Choose a node attribute file to import (eg. galFiltered.nodeAttrs1) and click Open <<BR>>3. Click Select Attributes and click on the check box for the name of the newly imported attribute (eg. Test``Node``Attribute1) ||Each node selected should display either a 1, 2 or 3 in the Test``Node``Attribute1 column || || ||
||B2.1.19 ||1. Click the Import Expression Matrix icon in the Browser <<BR>>2. Choose an expression matrix file (eg. galExpData.pvals) and click Open (leave the default setting of Apply nodes using ID) <<BR>>3. Click Select Attributes and click on the check boxes ||Each node selected should display expression values in the Xexp columns and p values in the Xsig columns (where X is the name of the experiment) || || ||



== Edge Attribute Table Browser Test Cases ==

|| '''Preconditions'''||'''Test Case ID'''|| '''Instructions'''||'''Expected Results'''||'''Date Executed'''||'''Pass/Fail'''||
||<|17> 1. Start Cytoscape <<BR>>2. Import a network file (eg. galFiltered.sif) <<BR>>3. Select the Edge Attribute Browser tab||B2.2.1||1. Click Select Attributes <<BR>>2. Check the appropriate attribute boxes eg. cannonicalName, interaction||A new column for each attribute should appear in the panel|| || ||
||B2.2.2||Select an edge and then select another edge while in the Edge Attribute Browser||Attributes should change to those for each specific edge|| || ||
||B2.2.3||Drag and select multiple edges||Edges should be highlighted and their attributes listed|| || ||
||B2.2.4||1. Select an edge <<BR>>2. Double click on the text under one of the attribute columns <<BR>>3. Edit the text of eg. interaction by changing the capitalisation the press enter||The Browser should reflect the text changes and they should persist even if the node is unselected and then reselected|| || ||
||B2.2.5||1. Drag and select several edges (say 5) <<BR>>2. Click create a new (string) attribute and call it Names <<BR>>3. Click on the Attribute batch editor and select the Copy tab, select interation from the Copy From menu and Names from the To menu <<BR>>4. Click GO||The contents of the Copy From cells should now appear in the new attribute column Names|| || ||
||B2.2.6||1. Select the Clear tab from the Attribute batch editor box <<BR>>2. Choose Names as the attribute column <<BR>>3. Click GO||The Browser should reflect the changes by showing no entries in the Names column|| || ||
||B2.2.7||1. Select the Operation tab from the edge Attribute Batch Editor <<BR>>2. Choose Set from the operation menu and choose the Names attribute as the column to edit <<BR>>3. Type “Anabolic Activation” into the text field and click GO||The Names attribute column should contain “Anabolic Activation” for all the selected nodes|| || ||
||B2.2.8||1. Repeat step 1 from B2.2.7 <<BR>>2. Choose Replace from the operation menu and choose the Names attribute as the column to edit <<BR>>3. Type “Phosphorylates” into the text field and click GO||The Names attribute column should contain “Phosphorylates” for all the selected nodes|| || ||
||B2.2.9||1. Repeat step 1 from B2.2.7 <<BR>>2. Choose To upper-case from the operation menu and choose the Names attribute as the column to edit <<BR>>3. Click GO||The Names attribute column should contain “PHOSPHORYLATES” or the text in the column should be all capitals|| || ||
||B2.2.10||1. Repeat step 1 from B2.2.7 <<BR>>2. Choose To lower-case from the operation menu and choose the Names attribute as the column to edit <<BR>>3. Click GO||The Names attribute column should contain “phosphorylates” or the text in the column should all be lower case|| || ||
||B2.2.11||1. Repeat step 1 from B2.2.7 <<BR>>2. Choose Add Prefix from the operation menu and choose the Names attribute as the column to edit <<BR>>3. Type “De-“ into the text field and click GO||The Names attribute column should contain “De-phosphorylates” or the text in the column should be preceded by “De-“|| || ||
||B2.2.12||1. Repeat step 1 from B2.2.7 <<BR>>2. Choose Add Suffix from the operation menu and choose the Names attribute as the column to edit <<BR>>3. Type “-serine residues” into the text field and click GO||The Names attribute column should contain “De-phosphorylates-serine residues” or the text in the column should be followed by “-serine residues”|| || ||
||B2.2.13||1. Click create a new (Integer) attribute and call it Numbers <<BR>>2. Repeat step 1 from B2.2.7 <<BR>>3. Choose Set from the operation menu and choose the Numbers attribute as the column to edit <<BR>>4. Type “2” into the text field and click GO||The Numbers attribute column should contain “2”|| || ||
||B2.2.14||1. Repeat step 1 from B2.2.7 <<BR>>2. Choose Add Number from the operation menu and choose the Numbers attribute as the column to edit <<BR>>3. Type “2” into the text field and click GO||The Numbers attribute column should contain “4”|| || ||
||B2.2.15||1. Repeat step 1 from B2.2.7 <<BR>>2. Choose Mul from the operation menu and choose the Numbers attribute as the column to edit <<BR>>3. Type “2” into the text field and click GO||The Numbers attribute column should contain “8”|| || ||
||B2.2.16||1. Repeat step 1 from B2.2.7 <<BR>>2. Choose Div from the operation menu and choose the Numbers attribute as the column to edit <<BR>>3. Type “4” into the text field and click GO||The Numbers attribute column should contain “2"|| || ||
||B2.2.17||1. Click the Import attributes from file icon in the Browser <<BR>>2. Choose an edge attribute file to import (eg. galFiltered.edgeAttrs1) and click Open <<BR>>3. Click Select Attributes and click on the check box for the name of the newly imported attribute (eg. Test``Edge``Attribute1)||Each edge selected should display either a 1, 2 or 3 in the Test``Edge``Attribute1 column|| || ||

== Network Attribute Table Browser Test Cases ==


||'''Preconditions'''||'''Test Case ID'''||'''Instructions'''||'''Expected Results'''||'''Date Executed'''||'''Pass/Fail'''||
||<|12> 1. Start Cytoscape <<BR>>2. Import a file (eg. galFiltered.sif) <<BR>>3. Select the Network Attribute Browser tab||B2.3.1||1. Click create a new (string) attribute and call it Names <<BR>>2. Click on the Attribute batch editor and select the Copy tab, select Value from the Copy From menu and Names from the To menu <<BR>>3. Click GO||The contents of the Copy From cells should now appear in the new attribute column Names|| || ||
||B2.3.2||1. Select the Clear tab from the Attribute batch editor box <<BR>>2. Choose Names as the attribute column <<BR>>3. Click GO||The Browser should reflect the changes by showing no entries in the Names column|| || ||
||B2.3.3||1. Select the Operation tab from the network Attribute Batch Editor <<BR>>2. Choose Set from the operation menu and choose the Names attribute as the column to edit <<BR>>3. Type “Metabolic” into the text field and click GO||The Names attribute column should contain “Metabolic Function” for all the selected nodes|| || ||
||B2.3.4||1. Repeat step 1 from B2.3.3 <<BR>>2. Choose Replace from the operation menu and choose the Names attribute as the column to edit <<BR>>3. Type “Galactose Metabolism” into the text field and click GO||The Names attribute column should contain “Galactose Metabolism” for all the selected nodes|| || ||
||B2.3.5||1. Repeat step 1 from B2.3.3 <<BR>>2. Choose To upper-case from the operation menu and choose the Names attribute as the column to edit <<BR>>3. Click GO||The Names attribute column should contain “GALACTOSE METABOLISM” or the text in the column should be all capitals|| || ||
||B2.3.6||1. Repeat step 1 from B2.3.3 <<BR>>2. Choose To lower-case from the operation menu and choose the Names attribute as the column to edit <<BR>>3. Click GO||The Names attribute column should contain “galactose metabolism” or the text in the column should all be lower case|| || ||
||B2.3.7||1. Repeat step 1 from B2.3.3 <<BR>>2. Choose Add Prefix from the operation menu and choose the Names attribute as the column to edit <<BR>>3. Type “Yeast-“ into the text field and click GO||The Names attribute column should contain “Yeast-galactose metabolism” or the text in the column should be preceded by “Yeast-“|| || ||
||B2.3.8||1. Repeat step 1 from B2.3.3 <<BR>>2. Choose Add Suffix from the operation menu and choose the Names attribute as the column to edit <<BR>>3. Type “-genes” into the text field and click GO||The Names attribute column should contain “Yeast-galactose metabolism-genes” or the text in the column should be followed by “-genes”|| || ||
||B2.3.9||1. Click create a new (Integer) attribute and call it Numbers <<BR>>2. Repeat step 1 from B2.3.3 <<BR>>3. Choose Set from the operation menu and choose the Numbers attribute as the column to edit <<BR>>4. Type “2” into the text field and click GO||The Numbers attribute column should contain “2”|| || ||
||B2.3.10||1. Repeat step 1 from B2.3.3 <<BR>>2. Choose Add Number from the operation menu and choose the Numbers attribute as the column to edit <<BR>>3. Type “2” into the text field and click GO||The Numbers attribute column should contain “4”|| || ||
||B2.3.11||1. Repeat step 1 from B2.3.3 <<BR>>2. Choose Mul from the operation menu and choose the Numbers attribute as the column to edit <<BR>>3. Type “2” into the text field and click GO||The Numbers attribute column should contain “8”|| || ||
||B2.3.12||1. Repeat step 1 from B2.3.3 <<BR>>2. Choose Div from the operation menu and choose the Numbers attribute as the column to edit <<BR>>3. Type “4” into the text field and click GO||The Numbers attribute column should contain “2”|| || ||


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