Diff for "Cytoscape_3/Cy3TestPlan/misc"

Differences between revisions 1 and 8 (spanning 7 versions)

Editor Test Cases

Need to be updated!

Preconditions	Test Case ID	Instructions	Expected Results	Date Executed	Pass/Fail
1. Start Cytoscape 2. Import a network file (eg. galFiltered.sif)	CE1	Right click on an empty space on the graph, select the Add Node menu from the popup menu.	A new node should appear number sequentially according to the number of times a new node has been added
	CE2	1. Right click on a node and select the "Add Edge" menu from the popup menu. 2. Click on an already existing node as the target for the interaction	A directed edge between the new node and the existing node should appear
	CE3	1. Select the new node and edge alone by dragging a box around them 2. Right-click on the node and then click Delete selected nodes and edges	The selected edge and node should be deleted and no longer appear on the graph

LinkOut Test Cases

Preconditions	Test Case ID	Instructions	Expected Results	Date Executed	Pass/Fail
1. Start Cytoscape 2. Import a network file (eg. galFiltered.sif)	LO1	1. Right click on a node and select LinkOut from the right-click menu 2. Select Reactome → ReactomeID	The link should open the web page www.reactome.org
	LO2	1. Right click on a node and select LinkOut from the right-click menu 2. Select Entrez → Protein	The link should open the web page www.ncbi.nlm.nih.gov
	LO3	1. Right click on a node and select LinkOut from the right-click menu 2. Select iHOP → yeast	The link should open the web page www.ihop-net.org

-  ← Revision 1 as of 2012-06-28 19:00:24 →
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+  ← Revision 8 as of 2012-06-28 20:21:53 →
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-Deletions are marked like this.
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-== GraphMerge Core Plugin Test Cases ==
+== Editor Test Cases ==

'''''Need to be updated!'''''
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-||<|3> 1. Start Cytoscape <<BR>>2. Import two network files: (eg. galFiltered.sif and BINDyeast.sif) <<BR>>3. Click on Plugins and select Advanced Network Merge <<BR>>4. Select each network from the available networks box and then click the right arrow to move them to the selected networks box. <<BR>>5. Click OK to merge the selected networks (Note: with large networks Cytoscape may not automatically create a graphical view, so click on the Edit menu with the network highlighted and click on Create View)||GM1||Before precondition step 5 select the Union operation||A new graph should be created displaying the merged networks (If this does not happen see preconditions Note)|| || ||

||GM2||Before precondition step 5 select the Intersection operation||A new graph should be created displaying the common nodes from the two networks|| || ||

||GM3||Before precondition step 5 select the Difference operation (order matters)||A new graph should be created displaying the parts of the first network that are not in the second network|| || ||
+||<|3> 1. Start Cytoscape <<BR>>2. Import a network file (eg. galFiltered.sif) ||CE1||Right click on an empty space on the graph, select the Add Node menu from the popup menu.||A new node should appear number sequentially according to the number of times a new node has been added|| || ||

||CE2||1. Right click on a node and select the "Add Edge" menu from the popup menu. <<BR>>2. Click on an already existing node as the target for the interaction||A directed edge between the new node and the existing node should appear|| || ||

||CE3||1. Select the new node and edge alone by dragging a box around them <<BR>>2. Right-click on the node and then click Delete selected nodes and edges||The selected edge and node should be deleted and no longer appear on the graph|| || ||
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-== LinkOut Core Plugin Test Cases ==
+== LinkOut Test Cases ==
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-== ManualLayout Core Plugin Test Cases ==

|| '''Preconditions'''|| '''Test Case ID'''||'''Instructions'''||'''Expected Results'''|| '''Date Executed'''||'''Pass/Fail'''||

|| 1. Start Cytoscape <<BR>>2. Import a network file (eg. galFiltered.sif)||ML1||Select a node on the graph and drag it to a new position and then drop it||The node selected should be highlighted and the user should be able to move it around, the edges connected moving with it|| || ||







== PSI-MI Core Plugin Test Cases ==







|| '''Preconditions'''|| '''Test Case ID'''||'''Instructions'''||'''Expected Results'''|| '''Date Executed'''||'''Pass/Fail'''||

||1. Start Cytoscape <<BR>>2. Import a network file (eg. [[attachment:Sample1.xml]]++)||P1|| ||The graph produced should contain only 6 nodes and 8 edges|| || ||

++File from: Kerrien S et al (2007) Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions. ''BMC Biol'' '''5''':44.