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Revision 7 as of 2010-01-28 17:32:17
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Revision 16 as of 2010-02-12 21:29:29
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 * Review of core API changes - Update Jan.28, expected to be done Feb.4  * Review of core API changes - Done: Feb.11.2010 - core API changes accepted after review/revision
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 * 2.7 beta1: End of February?  * 2.7 beta1: Released ~Feb.10, now in testing.
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||'''Embedded Networks''' ||UCSD || ||Ready for testing ||
||'''New Edge Types''' ||UCSD || ||Ready for testing ||
||'''[[RFC_Nested_Networks|Nested Networks]]'''||UCSD || A node may now have a reference to another Network, which allows us to capture the relationships between networks in networks themselves. This feature includes a new file format (NNF) for nested network I/O and direct nested network editing via the Editor and Right-click menu. A Visual Property has been added to provide control of the visualization of the nested network.||Ready for testing ||
||'''New Edge Types''' ||UCSD ||Several new edge types between solid and dashed have been added. ||Ready for testing ||
||'''Newlines and list editing in attribute browser''' ||UCSD ||The attribute browser has been updated to allow newline characters to be added by pressing the "Enter" key. List editing is now also enabled.||Ready for testing ||
||'''Automatic label wrap''' ||UCSD ||A new visual property has been added that sets the width of a label. Any label extending beyond this width will be automatically wrapped. ||Ready for testing ||
||'''Arrow color optionally locked to edge color''' ||UCSD ||Arrow color may now be bound to the edge color by checking a box in the Dependencies pane of the Default Appearance Browser in the VizMapper, which avoids the necessity of creating separate-yet-identical mappings for edge, source, and target arrows. ||Ready for testing ||
||'''PSICQUIC Web Service plugin''' ||UCSD ||This allows access to any [[http://code.google.com/p/psicquic/|PSICQUIC]] compliant database. ||Ready for testing ||
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= Testing Cytoscape 2.7 =
 * [[/Test Plan - 2.7|Test Plan - 2.7]]
= Test Cases - Cytoscape 2.7 =
 * [[/Test Plan - 2.7 | Test cases related to Nested Networks]]
 * [[/Core Plugins Test Cases| Core plugins_2.7]]
 * [[/UI Test Cases|Cytoscape Layout and User Interface 2.7]]

Cytoscape 2.7

Release 2.7 Use Cases / Overall Themes

  • Get ready for NCRR Site Visit
  • Quality improvements
  • Targeted new features

Timeline

  • Review of core API changes - Done: Feb.11.2010 - core API changes accepted after review/revision
  • Testing to start by Farzana week of Feb.8. (need a stable test release for this)
  • 2.7 beta1: Released ~Feb.10, now in testing.

Release 2.7 Features

New Features

Title

Lead

Description

Status

Nested Networks

UCSD

A node may now have a reference to another Network, which allows us to capture the relationships between networks in networks themselves. This feature includes a new file format (NNF) for nested network I/O and direct nested network editing via the Editor and Right-click menu. A Visual Property has been added to provide control of the visualization of the nested network.

Ready for testing

New Edge Types

UCSD

Several new edge types between solid and dashed have been added.

Ready for testing

Newlines and list editing in attribute browser

UCSD

The attribute browser has been updated to allow newline characters to be added by pressing the "Enter" key. List editing is now also enabled.

Ready for testing

Automatic label wrap

UCSD

A new visual property has been added that sets the width of a label. Any label extending beyond this width will be automatically wrapped.

Ready for testing

Arrow color optionally locked to edge color

UCSD

Arrow color may now be bound to the edge color by checking a box in the Dependencies pane of the Default Appearance Browser in the VizMapper, which avoids the necessity of creating separate-yet-identical mappings for edge, source, and target arrows.

Ready for testing

PSICQUIC Web Service plugin

UCSD

This allows access to any PSICQUIC compliant database.

Ready for testing

CyCommandHandlers

Scooter

Addition of a mechanism to the core to provide inter-plugin communication

Ready for testing

BioPAX Level 3 support

Toronto/Pathway Commons

Ready for testing

Release tasks

  • Review core API changes
  • Testing
    • Create review of new features for testing
  • Update the manual

Test Cases - Cytoscape 2.7

Cytoscape_2.7 (last edited 2010-03-18 16:26:58 by GaryBader)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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