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← Revision 9 as of 2010-02-23 17:20:53
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| All tests executed on Feb 10th'10 on Beta-2 | |
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| All tests executed on Feb 12th'10 on Beta-3 | |
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||FM1.1||Select New → Network → Empty Network||A new empty network canvas should appear called Network and it should appear in the list under the Networks tab in the control panel|| ||P || ||FM1.2||1. Hold shift and click on 5 nodes near each other <<BR>>2. Select New → Network → From selected nodes, all edges||A new network canvas, with the selected nodes and all the edges that connect them, should be created|| ||P || ||FM1.3||1. Drag and select several nodes and edges <<BR>>2. Select New → Network → From selected nodes, selected edges||A new network canvas with only selected nodes and edges should be created|| ||P || |
||FM1.1||Select New → Network → Empty Network||A new empty network canvas should appear called Network and it should appear in the list under the Networks tab in the control panel|| Feb 12th' 10||P || ||FM1.2||1. Hold shift and click on 5 nodes near each other <<BR>>2. Select New → Network → From selected nodes, all edges||A new network canvas, with the selected nodes and all the edges that connect them, should be created||Feb 12th' 10||P || ||FM1.3||1. Drag and select several nodes and edges <<BR>>2. Select New → Network → From selected nodes, selected edges||A new network canvas with only selected nodes and edges should be created|| Feb 12th' 10||P || |
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| ||FM3||Select Open and choose the galFiltered.cys session file from the sampleData directory||A session file with the galFiltered.gml network imported should be displayed|| || P|| | ||FM3||Select Open and choose the galFiltered.cys session file from the sampleData directory||A session file with the galFiltered.gml network imported should be displayed|| Feb 12th' 10||P || |
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||FM5||1. Click Save As… and type “galFiltered1.cys” into the text field <<BR>>2. Click Save||Cytoscape should create a new .cys file with the name entered in the specified directory|| || P|| ||FM6||Select Print and choose the appropriate printer and desired settings and then click print||A print out of the currently selected network should be produced|| || P|| ||FM7||1. Select Quit and click Yes, save and quit <<BR>>2. Start Cytoscape and load the .cys file||The .cys should contain the latest version of the test session with all the changes saved before quitting|| || P|| |
||FM5||1. Click Save As… and type “galFiltered1.cys” into the text field <<BR>>2. Click Save||Cytoscape should create a new .cys file with the name entered in the specified directory|| Feb 12th' 10||P || ||FM6||Select Print and choose the appropriate printer and desired settings and then click print||A print out of the currently selected network should be produced|| Feb 12th' 10||P || ||FM7||1. Select Quit and click Yes, save and quit <<BR>>2. Start Cytoscape and load the .cys file||The .cys should contain the latest version of the test session with all the changes saved before quitting||Feb 12th' 10||P || |
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| ||<rowbgcolor = "#FFCC99"> FM9.1||1. Select Import → Network (multiple file types)… <<BR>>2. Choose the galFiltered.xgmml file from the sampelData directory and click Import||A new version of the galFiltered network should appear in a different window|| || || | ||<rowbgcolor = "#FFCC99"> FM9.1||1. Select Import → Network (multiple file types)… <<BR>>2. Choose the galFiltered.xgmml file from the sampelData directory and click Import||A new version of the galFiltered network should appear in a different window|| Feb 12th' 10||P || |
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| ||<rowbgcolor = "#FFCC99"> FMFM9.3|| Select Import -> from web services, enter a valid gene and select the organism. Select the gene from the list that is produced and hit 'Retrieve Interactions' button, click ok on the window that appears|| The network of genes related to the entered gene should appear|| || || | ||<rowbgcolor = "#FFCC99"> FMFM9.3|| Select Import -> from web services, enter a valid gene and select the organism. Select the gene from the list that is produced and hit 'Retrieve Interactions' button, click ok on the window that appears|| The network of genes related to the entered gene should appear|| Feb 12th' 10||P || |
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| ||<rowbgcolor = "#FFCC99"> FMFM9.7||1. Select Import → Ontology and Annotation… <<BR>>2. Select Gene Association File for Saccharomyces cerevisiae from the Annotation menu and leave the default setting for Ontology <<BR>>3. Select one of the galFiltered networks and click on Go common Name from the Node Attribute Browser Select Attributes menu||Cytoscape should show a large network under the Networks tab in the Control Panel (view not created due to size) and there should be new attributes available for selection in the Node Attribute Browser|| |||| | ||<rowbgcolor = "#FFCC99"> FMFM9.7||1. Select Import → Ontology and Annotation… <<BR>>2. Select Gene Association File for Saccharomyces cerevisiae from the Annotation menu and leave the default setting for Ontology <<BR>>3. Select one of the galFiltered networks and click on Go common Name from the Node Attribute Browser Select Attributes menu||Cytoscape should show a large network under the Networks tab in the Control Panel (view not created due to size) and there should be new attributes available for selection in the Node Attribute Browser||Feb 12th' 10||P || |
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||<rowbgcolor = "#FFCC99"> FM9.9||1. Select Import → Vizmap Property File… <<BR>>2. Choose sampleStyles.props from the sampleData directory and click Open||All the nodes in the galFiltered network should be light gray with no border and each edge should be a black line labelled with the type of interaction that it represents|| || || ||<rowbgcolor = "#FFCC99"> FM9.10||1. Select Import → Import Attributes from NCBI Entrez Gene… <<BR>>2. Click Import <<BR>>3. Select one of the galFiltered networks and click on Entrez``Gene ID from the Node Attribute Browser Select Attributes menu||New attributes should be available for selection under the Node Attribute Browser including Entrez``Gene ID|| |||| ||<rowbgcolor = "#FFCC99"> FM9.11||1. Select Import → Import Attributes from Biomart… <<BR>>2. Select ENSEMBL 54 GENES (SANGER UK) – Saccharomyces cerevisiae genes (SGD1.01) from the Data Source menu and GO ID(s) from the Data Type menu <<BR>>3. Click the check box on the top of the list of available attributes and click Import <<BR>>4. Select one of the galFiltered networks and click on the new attribute from the Node Attribute Browser Select Attributes menu||New attributes should be available for selection under the Node Attribute Browser|| |||| |
||<rowbgcolor = "#FFCC99"> FM9.9||1. Select Import → Vizmap Property File… <<BR>>2. Choose sampleStyles.props from the sampleData directory and click Open||All the nodes in the galFiltered network should be light gray with no border and each edge should be a black line labelled with the type of interaction that it represents|| Feb 12th' 10||P || ||<rowbgcolor = "#FFCC99"> FM9.10||1. Select Import → Import Attributes from NCBI Entrez Gene… <<BR>>2. Click Import <<BR>>3. Select one of the galFiltered networks and click on Entrez``Gene ID from the Node Attribute Browser Select Attributes menu||New attributes should be available for selection under the Node Attribute Browser including Entrez``Gene ID|| Feb 12th' 10||P || ||<rowbgcolor = "#FFCC99"> FM9.11||1. Select Import → Import Attributes from Biomart… <<BR>>2. Select ENSEMBL 54 GENES (SANGER UK) – Saccharomyces cerevisiae genes (SGD1.01) from the Data Source menu and GO ID(s) from the Data Type menu <<BR>>3. Click the check box on the top of the list of available attributes and click Import <<BR>>4. Select one of the galFiltered networks and click on the new attribute from the Node Attribute Browser Select Attributes menu||New attributes should be available for selection under the Node Attribute Browser|| Feb 12th' 10||F (Ticket ID: 0002169)|| |
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| QA Note: All tests executed on Feb 12' 10; all except FM9.11 passed. | |
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||<|10> 1. Start Cytoscape <<BR>>2. Import a network file (eg. galFiltered.sif) <<BR>>3. Click on File from the toolbar||FM10.1||1. Select Export → Network and attributes as XGMML… <<BR>>2. Save as Test1.xgmml <<BR>>3. Close Cytoscape and restart it, Select Import → Network (multiple file types)… and import Test1.xgmml||Test1 should be an exact copy of the network exported before restarting Cytoscape|| |||| ||FM10.2||1. Select Export → Network as GML… <<BR>>2. Save as Test2.gml <<BR>>3. Select Import → Network (multiple file types)… and import Test2.gml||Test2 should be a copy of the network exported but should have slightly different features (eg. Background)|| || || ||FM10.3||1. Select Export → Network as SIF File… <<BR>>2. Save as Test3.sif <<BR>>3. Select Import → Network (multiple file types)… and import Test3.sif||Test3 should be a copy of the network exported and should be exactly the same as galFiltered.sif|| || || ||FM10.4||1. Select Export → Node Attributes <<BR>>2. Click the GO Common Name check box from the list of attributes <<BR>>3. Click Choose Directory and Save, select the desired directory and click Choose||Verify that the attributes were saved by opening the attribute file in a text editor, the file should contain a list of the gene IDs from the network and their corresponding GO common names|| || || ||FM10.5||1. Select Export → Edge Attributes <<BR>>2. Click the interaction check box from the list of attributes <<BR>>3. Click Choose Directory and Save, select the desired directory and click Choose||Verify that the attributes were saved by opening the attribute file in a text editor, the file should contain a list of the edge IDs from the network and their corresponding interactions|| || || ||FM10.6||1. Click on the galFiltered.sif network from the Networks tab <<BR>>2. Select Export → Vizmap properties <<BR>>3. Type Test4.props as the file name, choose the appropriate directory and click save <<BR>>4. Click on a different network (with a different visual style) and Select Import → Vizmap Property File…||The currently selected network should now exhibit the visual style of the network whose Vizmap properties were exported|| || || ||FM10.7||1. Select Export → Network as Graphics… <<BR>>2. Click Choose and type Yeast Network as the file name and click Save <<BR>>3. Leave the Format as PDF and Click OK <<BR>>4. Open Yeast Network.pdf in a PDF reader||The PDF should contain a screen shot of the portion of the network visible in the canvas|| || || ||FM10.8||1. Repeat steps 1 & 2 from FM10.7 <<BR>>2. Select .PNG from the format menu and click OK <<BR>>3. Leave the bitmap settings as default and click OK <<BR>>4. Open the Yeast Network.png in a picture viewer||The PNG should contain a screen shot of the portion of the network visible in the canvas|| || || ||FM10.9|| Select Export -> Network as PSI_Mi Level 1.0 -> Select the directory and enter file name||The xml file should get created in the location specified || || || ||FM10.10||Select Export -> Network as PSI_Mi Level 2.5 -> Select the directory and enter file name||The xml file should get created in the location specified || || || |
||<|10> 1. Start Cytoscape <<BR>>2. Import a network file (eg. galFiltered.sif) <<BR>>3. Click on File from the toolbar||FM10.1||1. Select Export → Network and attributes as XGMML… <<BR>>2. Save as Test1.xgmml <<BR>>3. Close Cytoscape and restart it, Select Import → Network (multiple file types)… and import Test1.xgmml||Test1 should be an exact copy of the network exported before restarting Cytoscape||Feb 16th' 10 ||P|| ||FM10.2||1. Select Export → Network as GML… <<BR>>2. Save as Test2.gml <<BR>>3. Select Import → Network (multiple file types)… and import Test2.gml||Test2 should be a copy of the network exported but should have slightly different features (eg. Background)||Feb 16th' 10 ||P|| ||FM10.3||1. Select Export → Network as SIF File… <<BR>>2. Save as Test3.sif <<BR>>3. Select Import → Network (multiple file types)… and import Test3.sif||Test3 should be a copy of the network exported and should be exactly the same as galFiltered.sif||Feb 16th' 10 ||P|| ||FM10.4||1. Select Export → Node Attributes <<BR>>2. Click the GO Common Name check box from the list of attributes <<BR>>3. Click Choose Directory and Save, select the desired directory and click Choose||Verify that the attributes were saved by opening the attribute file in a text editor, the file should contain a list of the gene IDs from the network and their corresponding GO common names|| Feb 16th' 10 ||P|| ||FM10.5||1. Select Export → Edge Attributes <<BR>>2. Click the interaction check box from the list of attributes <<BR>>3. Click Choose Directory and Save, select the desired directory and click Choose||Verify that the attributes were saved by opening the attribute file in a text editor, the file should contain a list of the edge IDs from the network and their corresponding interactions|| Feb 16th' 10 ||P|| ||FM10.6||1. Click on the galFiltered.sif network from the Networks tab <<BR>>2. Select Export → Vizmap properties <<BR>>3. Type Test4.props as the file name, choose the appropriate directory and click save <<BR>>4. Click on a different network (with a different visual style) and Select Import → Vizmap Property File…||The currently selected network should now exhibit the visual style of the network whose Vizmap properties were exported||Feb 16th' 10 ||P|| ||FM10.7||1. Select Export → Network as Graphics… <<BR>>2. Click Choose and type Yeast Network as the file name and click Save <<BR>>3. Leave the Format as PDF and Click OK <<BR>>4. Open Yeast Network.pdf in a PDF reader||The PDF should contain a screen shot of the portion of the network visible in the canvas||Feb 16th' 10 ||P|| ||FM10.8||1. Repeat steps 1 & 2 from FM10.7 <<BR>>2. Select .PNG from the format menu and click OK <<BR>>3. Leave the bitmap settings as default and click OK <<BR>>4. Open the Yeast Network.png in a picture viewer||The PNG should contain a screen shot of the portion of the network visible in the canvas|| Feb 16th' 10 ||P|| ||FM10.9|| Select Export -> Network as PSI_Mi Level 1.0 -> Select the directory and enter file name||The xml file should get created in the location specified || Feb 16th' 10 ||F (Ticket # 0002173)|| ||FM10.10||Select Export -> Network as PSI_Mi Level 2.5 -> Select the directory and enter file name||The xml file should get created in the location specified ||Feb 16th' 10 ||F (Ticket # 0002173)|| |
UI Test Cases for File Menu - Main
Preconditions |
Test Case ID |
Instructions |
Expected Results |
Date Executed |
Results |
1. Start Cytoscape |
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FM1.1 |
Select New → Network → Empty Network |
A new empty network canvas should appear called Network and it should appear in the list under the Networks tab in the control panel |
Feb 12th' 10 |
P |
|
FM1.2 |
1. Hold shift and click on 5 nodes near each other |
A new network canvas, with the selected nodes and all the edges that connect them, should be created |
Feb 12th' 10 |
P |
|
FM1.3 |
1. Drag and select several nodes and edges |
A new network canvas with only selected nodes and edges should be created |
Feb 12th' 10 |
P |
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FM2 |
Select New → Session, click Yes when the caution box appears |
A new session should be started with a clear canvas and no networks |
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P |
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FM3 |
Select Open and choose the galFiltered.cys session file from the sampleData directory |
A session file with the galFiltered.gml network imported should be displayed |
Feb 12th' 10 |
P |
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FM4 |
Click Save |
Cytoscape should save your progress to the current session file (galFiltered.cys) |
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P |
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FM5 |
1. Click Save As… and type “galFiltered1.cys” into the text field |
Cytoscape should create a new .cys file with the name entered in the specified directory |
Feb 12th' 10 |
P |
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FM6 |
Select Print and choose the appropriate printer and desired settings and then click print |
A print out of the currently selected network should be produced |
Feb 12th' 10 |
P |
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FM7 |
1. Select Quit and click Yes, save and quit |
The .cys should contain the latest version of the test session with all the changes saved before quitting |
Feb 12th' 10 |
P |
UI Test Cases for File Menu - Import sub menu
Preconditions |
Test Case ID |
Instructions |
Expected Results |
Date Executed |
|
1. Start Cytoscape |
|||||
FM9.1 |
1. Select Import → Network (multiple file types)… |
A new version of the galFiltered network should appear in a different window |
Feb 12th' 10 |
P |
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FM9.2 |
Import Network from Table (Text/MS Excel) is covered under the Table Import core plugin test cases |
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FMFM9.3 |
Select Import -> from web services, enter a valid gene and select the organism. Select the gene from the list that is produced and hit 'Retrieve Interactions' button, click ok on the window that appears |
The network of genes related to the entered gene should appear |
Feb 12th' 10 |
P |
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FM9.4 |
Importing node attributes is covered under the Node Attribute Browser core plugin test cases |
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FM9.5 |
Importing Attributes from Table (Text/MS Excel) is covered under the Browser Core Plugins Test Cases |
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FM9.6 |
Importing edge attributes is covered under the Edge Attribute Browser core plugin test cases |
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FMFM9.7 |
1. Select Import → Ontology and Annotation… |
Cytoscape should show a large network under the Networks tab in the Control Panel (view not created due to size) and there should be new attributes available for selection in the Node Attribute Browser |
Feb 12th' 10 |
P |
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FM9.8 |
Importing an Attribute Expression Matrix is covered under the Node Attribute Browser core plugin test cases |
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FM9.9 |
1. Select Import → Vizmap Property File… |
All the nodes in the galFiltered network should be light gray with no border and each edge should be a black line labelled with the type of interaction that it represents |
Feb 12th' 10 |
P |
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FM9.10 |
1. Select Import → Import Attributes from NCBI Entrez Gene… |
New attributes should be available for selection under the Node Attribute Browser including EntrezGene ID |
Feb 12th' 10 |
P |
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FM9.11 |
1. Select Import → Import Attributes from Biomart… |
New attributes should be available for selection under the Node Attribute Browser |
Feb 12th' 10 |
F (Ticket ID: 0002169) |
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UI Test Cases for File Menu - Export sub menu
Preconditions |
Test Case ID |
Instructions |
Expected Results |
Date Executed |
Pass/Fail |
1. Start Cytoscape |
FM10.1 |
1. Select Export → Network and attributes as XGMML… |
Test1 should be an exact copy of the network exported before restarting Cytoscape |
Feb 16th' 10 |
P |
FM10.2 |
1. Select Export → Network as GML… |
Test2 should be a copy of the network exported but should have slightly different features (eg. Background) |
Feb 16th' 10 |
P |
|
FM10.3 |
1. Select Export → Network as SIF File… |
Test3 should be a copy of the network exported and should be exactly the same as galFiltered.sif |
Feb 16th' 10 |
P |
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FM10.4 |
1. Select Export → Node Attributes |
Verify that the attributes were saved by opening the attribute file in a text editor, the file should contain a list of the gene IDs from the network and their corresponding GO common names |
Feb 16th' 10 |
P |
|
FM10.5 |
1. Select Export → Edge Attributes |
Verify that the attributes were saved by opening the attribute file in a text editor, the file should contain a list of the edge IDs from the network and their corresponding interactions |
Feb 16th' 10 |
P |
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FM10.6 |
1. Click on the galFiltered.sif network from the Networks tab |
The currently selected network should now exhibit the visual style of the network whose Vizmap properties were exported |
Feb 16th' 10 |
P |
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FM10.7 |
1. Select Export → Network as Graphics… |
The PDF should contain a screen shot of the portion of the network visible in the canvas |
Feb 16th' 10 |
P |
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FM10.8 |
1. Repeat steps 1 & 2 from FM10.7 |
The PNG should contain a screen shot of the portion of the network visible in the canvas |
Feb 16th' 10 |
P |
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FM10.9 |
Select Export -> Network as PSI_Mi Level 1.0 -> Select the directory and enter file name |
The xml file should get created in the location specified |
Feb 16th' 10 |
F (Ticket # 0002173) |
|
FM10.10 |
Select Export -> Network as PSI_Mi Level 2.5 -> Select the directory and enter file name |
The xml file should get created in the location specified |
Feb 16th' 10 |
F (Ticket # 0002173) |