Name

Lead Group

Time Required

Status

Layout Manager / Broker

UCSF - Scooter

checked in/awaiting feedback

Groups (formerly known as metanodes

UCSF, Agilent

Hyperedges

Aglient

1-2 weeks

finalizing documentation, testing

Document Event Handling (write Doclets)

Everyone

Remove Deprecation Warnings

Everyone

ongoing

ongoing

["VizMapUI"] Redesign

UCSD - Kei

Alpha release in March

Building mockups

Plugin Website / Automatic plugin download

UCSD - Peng, ISB - Sarah

10 weeks

ongoing

Linkout from Attribute Browser

UCSD - Kei

1-2 weeks

Prototype is already there, but need to integrate it with Linkout plugin.

Create cytoscape-helpdesk

UCSD - Peng

2 weeks

Peformance (speed + memory) profiling

UCSD, AMC - Piet

GINY Refactoring

UCSD - Mike

Properties / XML Config

UCSD,UCSD - Scooter

1 month (? Depends on the goal)

Planning

Cytoscape Class Cleanup

MSKCC - Ethan

CyAttributes Name Clashes

MSKCC - Ethan

Pathway Commons Connectivity

MSKCC, Gary

Filters

MSKCC - Ethan, UCSD - Mike

Combining Attributes / Formulas

MSKCC - Ethan, UCSF - Scooter, Alex

Library Reduction / Cleanup

ISB - Sarah

1 week

ongoing

Web Services / Database Connectivity Guidelines

ISB - Sarah, UCSF - Alex

2 weeks (more depending on goals)

ongong

Usability Assessment

Pasteur, ISB - Sarah

ongoing

ongoing

Testing

AMC - Piet, Pasteur - Tero

Undo Manager

AMC - Piet, UCSD - Peng

Interactive Layout (Bubble, Snap-To)

UCSF - Alex, Agilent - Allan K, MSKCC - Ben

1-2 weeks

bubble-router mostly implemented, nearing internal release to core developers

Layers / Annotation / UI for custom nodes

UCSF - Alex, Agilent - Allan K, MSKCC - Ben

Papers

Everyone

Tutorials

Unassigned

Bug Fixing

Everyone

Name

Lead Group

Time Required

Status

Name

Lead Group

Time Required

Status

Custom Node / Edge Graphics (MIMS)

UCSF - Alex, Agilent - Allan K, MSKCC - Ben