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TableOfContents

Release 2.5 Use Cases / Overall Themes

  1. Pathway / Annnotation
  2. Usability
  3. Navigation / Find

Timeline

Target Release Date: June 1, 2007

Release 2.5 Features

TODO

Name

Lead Group

Time Required

Status

Layout Manager / Broker

UCSF - Scooter

Groups (formerly known as metanodes

UCSF, Agilent

Hyperedges

Aglient

Document Event Handling (write Doclets)

Everyone

Remove Deprecation Warnings

Everyone

ongoing

ongoing

["VizMapUI"] Redesign

UCSD - Kei

Plugin Website / Automatic plugin download

UCSD - Peng, ISB - Sarah

10 weeks

ongoing

Linkout from Attribute Browser

UCSD - Kei

Create cytoscape-helpdesk

UCSD - Peng

2 weeks

Peformance (speed + memory) profiling

UCSD, AMC - Piet

GINY Refactoring

UCSD - Mike

Properties / XML Config

UCSD,UCSD - Scooter

Cytoscape Class Cleanup

MSKCC - Ethan

CyAttributes Name Clashes

MSKCC - Ethan

Pathway Commons Connectivity

MSKCC, Gary

Filters

MSKCC - Ethan, UCSD - Mike

Combining Attributes / Formulas

MSKCC - Ethan, UCSF - Scooter, Alex

Library Reduction / Cleanup

ISB - Sarah

Web Services / Database Connectivity Guidelines

ISB - Sarah, UCSF - Alex

Usability Assessment

Pasteur, ISB - Sarah

Testing

AMC - Piet, Pasteur - Tero

Undo Manager

AMC - Piet, UCSD - Peng

Interactive Layout (Bubble, Snap-To)

UCSF - Alex, Agilent - Allan K, MSKCC - Ben

Layers / Annotation / UI for cutsom nodes

UCSF - Alex, Agilent - Allan K, MSKCC - Ben

Papers

Everyone

Tutorials

Unassigned

Bug Fixing

Everyone

Completed

Name

Lead Group

Time Required

Status

Postponed

Name

Lead Group

Time Required

Status

Custom Node / Edge Graphics (MIMS)

UCSF - Alex, Agilent - Allan K, MSKCC - Ben

Cytoscape_2.5 (last edited 2009-02-12 01:03:34 by localhost)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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