Cytoscape Wiki|
← Revision 64 as of 2007-06-07 16:06:49
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← Revision 65 as of 2007-06-07 18:19:48 →
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| Release Date: '''''July 1, 2007''''' | Release Date: '''''July 16, 2007''''' |
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| ||Document Event Handling (preliminary work to event handling refactoring, write Doclets) ||Everyone || || || || | |
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| ||["Layers / Annotation / UI for custom nodes"] ||UCSF - Alex, Agilent - Allan K, MSKCC - Ben ||TBD (requires further study of renderer) ||some initial functionality implemented, and utilized in bubble router prototype ||Planning for 2.6 || | |
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||["Layers / Annotation / UI for custom nodes"] ||UCSF - Alex, Agilent - Allan K, MSKCC - Ben ||TBD (requires further study of renderer) ||some initial functionality implemented, and utilized in bubble router prototype || ||Document Event Handling (preliminary work to event handling refactoring, write Doclets) ||Everyone || || || |
Release 2.5 Use Cases / Overall Themes
- Pathway / Annnotation
- Usability
- Navigation / Find
Timeline
Release Date: July 16, 2007
Release 2.5 Features
TODO
Name |
Lead Group |
Time Required |
Status |
Remaining Development Time |
Layout Manager / Broker |
UCSF - Scooter |
|
checked in/awaiting feedback |
testing |
Groups (formerly known as metanodes) |
UCSF, Agilent |
|
Completed API and two client plugins (namedSelectionPlugin, metanodePlugin2) |
testing |
Hyperedges |
Agilent |
1-2 weeks |
finalizing documentation, testing |
|
["VizMapUI"] Redesign |
UCSD - Kei |
|
testing/compatibility test/backend cleaning. |
tuning and testing. JUnit/Swing-unit tests are required. |
Plugin Website |
UCSD - Peng |
10 weeks |
Test site is at http://cytoscape.org/plugins25/index.php |
Finished |
Automatic Plugin Download |
ISB - Sarah |
|
PluginManager API and dialog code in place, writing documentation |
testing |
Create cytoscape-helpdesk |
UCSD - Peng |
2 weeks |
FAQ is in progress |
|
Peformance (speed + memory) profiling |
UCSD - Mike, AMC - Piet |
1 week |
Framework complete, just need to add a few more events |
1 week |
Pathway Commons Connectivity |
MSKCC, Gary |
ETA, May 7. |
Plugin and webservices API in progress. |
1.5 weeks |
["Filters UI Redesign"] |
MSKCC - Ethan, UCSD - Mike, Peng |
7 weeks |
Implementation is in progress |
1 week |
Library Reduction / Cleanup |
ISB - Sarah |
1 week |
ongoing |
finished |
Testing |
AMC - Piet, Pasteur - Tero |
|
|
1 week |
Undo Manager |
AMC - Piet, UCSD - Mike |
|
Checked in/awaiting feedback |
testing |
Interactive Layout (Bubble, Snap-To) |
UCSF - Alex, Agilent - Allan K, MSKCC - Ben |
1-2 weeks |
bubble-router mostly implemented, nearing internal release to core developers |
Plan to release as plugin with 2.5 |
Papers |
Everyone |
|
|
|
Bug Fixing |
Everyone |
|
|
|
Remove Deprecation Warnings |
Everyone |
ongoing |
ongoing |
|
Postponed
Name |
Lead Group |
Time Required |
Status |
Tutorials |
Unassigned |
|
|
["Layers / Annotation / UI for custom nodes"] |
UCSF - Alex, Agilent - Allan K, MSKCC - Ben |
TBD (requires further study of renderer) |
some initial functionality implemented, and utilized in bubble router prototype |
Document Event Handling (preliminary work to event handling refactoring, write Doclets) |
Everyone |
|
|
Usability Assessment |
Pasteur, ISB - Sarah |
ongoing |
ongoing |
Web Services / Database Connectivity Guidelines |
ISB - Sarah, UCSF - Alex |
RFC started, discussions ongoing |
ongoing - Planning for 2.6 |
Linkout from Attribute Browser |
UCSD - Kei |
1-2 weeks |
Prototype is already there, but need to integrate it with Linkout plugin. |
Custom Node / Edge Graphics (MIMS) |
UCSF - Alex, Agilent - Allan K, MSKCC - Ben |
|
|
Cytoscape Class Cleanup |
MSKCC - Ethan |
|
|
Combining Attributes / Formulas |
MSKCC - Ethan, UCSF - Scooter, Alex |
|
|
GINY Refactoring |
UCSD - Mike |
|
|
Properties / XML Config |
UCSD,UCSF - Scooter |
1 month (? Depends on the goal) |
Planning |
CyAttributes Name Clashes |
MSKCC - Ethan |
|
Lower priority; will be completed if there is time, after Pathway Commons and Filters. |