Cytoscape Wiki|
← Revision 36 as of 2007-04-16 23:52:27
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← Revision 37 as of 2007-04-25 19:16:26 →
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||'''Name''' ||'''Lead Group''' ||'''Time Required''' ||'''Status''' || ||Layout Manager / Broker ||UCSF - Scooter || ||checked in/awaiting feedback || ||Groups (formerly known as metanodes ||UCSF, Agilent || ||Completed API and two client plugins (namedSelectionPlugin, metanodePlugin2) || ||Hyperedges ||Agilent ||1-2 weeks ||finalizing documentation, testing || ||Document Event Handling (preliminary work to event handling refactoring, write Doclets) ||Everyone || || || ||["VizMapUI"] Redesign ||UCSD - Kei ||Alpha release in March ||Building mockups and cleaning backend code || ||Plugin Website / Automatic plugin download ||UCSD - Peng, ISB - Sarah ||10 weeks ||Planning/Design of website Manager in place awaiting feedback, bug fixing || ||Linkout from Attribute Browser ||UCSD - Kei ||1-2 weeks ||Prototype is already there, but need to integrate it with Linkout plugin. || ||Create cytoscape-helpdesk ||UCSD - Peng ||2 weeks ||FAQ is in progress || ||Peformance (speed + memory) profiling ||UCSD - Mike, AMC - Piet ||1 week|| Framework complete, just need to add a few more events || ||Pathway Commons Connectivity ||MSKCC, Gary ||TBD based on scope/design meeting 2/15 ||RFC is in progress. || ||Filters ||MSKCC - Ethan, UCSD - Mike, Peng || ||RFC is in progress || ||Library Reduction / Cleanup ||ISB - Sarah ||1 week ||ongoing || ||Web Services / Database Connectivity Guidelines ||ISB - Sarah, UCSF - Alex ||2 weeks (more depending on goals) ||ongong || ||Usability Assessment ||Pasteur, ISB - Sarah ||ongoing ||ongoing || ||Testing ||AMC - Piet, Pasteur - Tero || || || ||Undo Manager ||AMC - Piet, UCSD - Mike || || Checked in/awaiting feedback || ||Interactive Layout (Bubble, Snap-To) ||UCSF - Alex, Agilent - Allan K, MSKCC - Ben ||1-2 weeks ||bubble-router mostly implemented, nearing internal release to core developers || ||Layers / Annotation / UI for custom nodes ||UCSF - Alex, Agilent - Allan K, MSKCC - Ben ||TBD (requires further study of renderer) ||some initial functionality implemented, and utilized in bubble router prototype || ||Papers ||Everyone || || || ||Tutorials ||Unassigned || || || ||Bug Fixing ||Everyone || || || ||Remove Deprecation Warnings ||Everyone ||ongoing ||ongoing || == Completed == ||'''Name''' ||'''Lead Group''' ||'''Time Required''' ||'''Status''' || |
||'''Name''' ||'''Lead Group''' ||'''Time Required''' ||'''Status''' ||'''Remaining Development Time'''|| ||Layout Manager / Broker ||UCSF - Scooter || ||checked in/awaiting feedback ||testing || ||Groups (formerly known as metanodes ||UCSF, Agilent || ||Completed API and two client plugins (namedSelectionPlugin, metanodePlugin2) ||testing || ||Hyperedges ||Agilent ||1-2 weeks ||finalizing documentation, testing || || ||Document Event Handling (preliminary work to event handling refactoring, write Doclets) ||Everyone || || || || ||["VizMapUI"] Redesign ||UCSD - Kei ||Alpha release in March ||Building mockups and cleaning backend code || || ||Plugin Website / Automatic plugin download ||UCSD - Peng, ISB - Sarah ||10 weeks ||Planning/Design of website Manager in place awaiting feedback, bug fixing || || ||Linkout from Attribute Browser ||UCSD - Kei ||1-2 weeks ||Prototype is already there, but need to integrate it with Linkout plugin. || || ||Create cytoscape-helpdesk ||UCSD - Peng ||2 weeks ||FAQ is in progress || || ||Peformance (speed + memory) profiling ||UCSD - Mike, AMC - Piet ||1 week|| Framework complete, just need to add a few more events ||1 week|| ||Pathway Commons Connectivity ||MSKCC, Gary ||TBD based on scope/design meeting 2/15 ||RFC is in progress. || || ||Filters ||MSKCC - Ethan, UCSD - Mike, Peng || ||RFC is in progress || || ||Library Reduction / Cleanup ||ISB - Sarah ||1 week ||ongoing || || ||Web Services / Database Connectivity Guidelines ||ISB - Sarah, UCSF - Alex ||2 weeks (more depending on goals) ||ongong || || ||Usability Assessment ||Pasteur, ISB - Sarah ||ongoing ||ongoing || || ||Testing ||AMC - Piet, Pasteur - Tero || || || || ||Undo Manager ||AMC - Piet, UCSD - Mike || || Checked in/awaiting feedback || testing || ||Interactive Layout (Bubble, Snap-To) ||UCSF - Alex, Agilent - Allan K, MSKCC - Ben ||1-2 weeks ||bubble-router mostly implemented, nearing internal release to core developers || || ||Layers / Annotation / UI for custom nodes ||UCSF - Alex, Agilent - Allan K, MSKCC - Ben ||TBD (requires further study of renderer) ||some initial functionality implemented, and utilized in bubble router prototype || || ||Papers ||Everyone || || || || ||Tutorials ||Unassigned || || || || ||Bug Fixing ||Everyone || || || || ||Remove Deprecation Warnings ||Everyone ||ongoing ||ongoing || || |
Release 2.5 Use Cases / Overall Themes
- Pathway / Annnotation
- Usability
- Navigation / Find
Timeline
Target Release Date: June 1, 2007
Release 2.5 Features
TODO
Name |
Lead Group |
Time Required |
Status |
Remaining Development Time |
Layout Manager / Broker |
UCSF - Scooter |
|
checked in/awaiting feedback |
testing |
Groups (formerly known as metanodes |
UCSF, Agilent |
|
Completed API and two client plugins (namedSelectionPlugin, metanodePlugin2) |
testing |
Hyperedges |
Agilent |
1-2 weeks |
finalizing documentation, testing |
|
Document Event Handling (preliminary work to event handling refactoring, write Doclets) |
Everyone |
|
|
|
["VizMapUI"] Redesign |
UCSD - Kei |
Alpha release in March |
Building mockups and cleaning backend code |
|
Plugin Website / Automatic plugin download |
UCSD - Peng, ISB - Sarah |
10 weeks |
Planning/Design of website Manager in place awaiting feedback, bug fixing |
|
Linkout from Attribute Browser |
UCSD - Kei |
1-2 weeks |
Prototype is already there, but need to integrate it with Linkout plugin. |
|
Create cytoscape-helpdesk |
UCSD - Peng |
2 weeks |
FAQ is in progress |
|
Peformance (speed + memory) profiling |
UCSD - Mike, AMC - Piet |
1 week |
Framework complete, just need to add a few more events |
1 week |
Pathway Commons Connectivity |
MSKCC, Gary |
TBD based on scope/design meeting 2/15 |
RFC is in progress. |
|
Filters |
MSKCC - Ethan, UCSD - Mike, Peng |
|
RFC is in progress |
|
Library Reduction / Cleanup |
ISB - Sarah |
1 week |
ongoing |
|
Web Services / Database Connectivity Guidelines |
ISB - Sarah, UCSF - Alex |
2 weeks (more depending on goals) |
ongong |
|
Usability Assessment |
Pasteur, ISB - Sarah |
ongoing |
ongoing |
|
Testing |
AMC - Piet, Pasteur - Tero |
|
|
|
Undo Manager |
AMC - Piet, UCSD - Mike |
|
Checked in/awaiting feedback |
testing |
Interactive Layout (Bubble, Snap-To) |
UCSF - Alex, Agilent - Allan K, MSKCC - Ben |
1-2 weeks |
bubble-router mostly implemented, nearing internal release to core developers |
|
Layers / Annotation / UI for custom nodes |
UCSF - Alex, Agilent - Allan K, MSKCC - Ben |
TBD (requires further study of renderer) |
some initial functionality implemented, and utilized in bubble router prototype |
|
Papers |
Everyone |
|
|
|
Tutorials |
Unassigned |
|
|
|
Bug Fixing |
Everyone |
|
|
|
Remove Deprecation Warnings |
Everyone |
ongoing |
ongoing |
|
Postponed
Name |
Lead Group |
Time Required |
Status |
Custom Node / Edge Graphics (MIMS) |
UCSF - Alex, Agilent - Allan K, MSKCC - Ben |
|
|
Cytoscape Class Cleanup |
MSKCC - Ethan |
|
|
Combining Attributes / Formulas |
MSKCC - Ethan, UCSF - Scooter, Alex |
|
|
GINY Refactoring |
UCSD - Mike |
|
|
Properties / XML Config |
UCSD,UCSF - Scooter |
1 month (? Depends on the goal) |
Planning |
CyAttributes Name Clashes |
MSKCC - Ethan |
|
Lower priority; will be completed if there is time, after Pathway Commons and Filters. |